RPSBLAST alignment of GI: 254780805 and SCOP domain: d1r71a_

Alignment

>d1r71a_ a.4.14.1 (A:) Transcriptional repressor protein KorB DNA-binding domain {Escherichia coli [TaxId: 562]} Length = 114

 Score = 81.9 bits (202), Expect = 6e-17
 Identities = 23/108 (21%), Positives = 47/108 (43%), Gaps = 5/108 (4%)

Query: 125 AIVENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVRE 184
            ++EN+QR +L P E A    + +++ G  + DI   +GKS + +   + +L LP  + +
Sbjct: 4   QVIENLQRNELTPREIADFIGRELAK-GKKKGDIAKEIGKSPAFITQHVTLLDLPEKIAD 62

Query: 185 MIRKEEISLGHARTLVSTSDPLSLAQV--IVSKKMS--VRDTEELVQE 228
                 +        + T+      +V   +        R T +L++E
Sbjct: 63  AFNTGRVRDVTVVNELVTAFKKRPEEVEAWLDDDTQEITRGTVKLLRE 110

SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: KorB DNA-binding domain-like
family: KorB DNA-binding domain-like
domain: Transcriptional repressor protein KorB DNA-binding domain
species: Escherichia coli [TaxId: 562]