BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780805|ref|YP_003065218.1| chromosome partitioning
protein B [Candidatus Liberibacter asiaticus str. psy62]
(300 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780805|ref|YP_003065218.1| chromosome partitioning protein B [Candidatus Liberibacter
asiaticus str. psy62]
Length = 300
Score = 604 bits (1558), Expect = e-175, Method: Compositional matrix adjust.
Identities = 300/300 (100%), Positives = 300/300 (100%)
Query: 1 MSNNYSKRRLGRGLAALIGEVNQSIDSPEKKTETIPESQDCISIHSIVPNPHNPRNYFES 60
MSNNYSKRRLGRGLAALIGEVNQSIDSPEKKTETIPESQDCISIHSIVPNPHNPRNYFES
Sbjct: 1 MSNNYSKRRLGRGLAALIGEVNQSIDSPEKKTETIPESQDCISIHSIVPNPHNPRNYFES 60
Query: 61 EGLEDLCQSIKSHGIIQPLIVRAIDNGLYKIIAGERRFRAAKMASLSEVPVIIRNVDNKS 120
EGLEDLCQSIKSHGIIQPLIVRAIDNGLYKIIAGERRFRAAKMASLSEVPVIIRNVDNKS
Sbjct: 61 EGLEDLCQSIKSHGIIQPLIVRAIDNGLYKIIAGERRFRAAKMASLSEVPVIIRNVDNKS 120
Query: 121 SLEIAIVENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPS 180
SLEIAIVENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPS
Sbjct: 121 SLEIAIVENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPS 180
Query: 181 SVREMIRKEEISLGHARTLVSTSDPLSLAQVIVSKKMSVRDTEELVQEQDNKKEKRKKIF 240
SVREMIRKEEISLGHARTLVSTSDPLSLAQVIVSKKMSVRDTEELVQEQDNKKEKRKKIF
Sbjct: 181 SVREMIRKEEISLGHARTLVSTSDPLSLAQVIVSKKMSVRDTEELVQEQDNKKEKRKKIF 240
Query: 241 EGSREKEKYLTDLEKKISSKVGLNISIKHRNNKGQFCIKYETNEQLKIICSLLGENDFEY 300
EGSREKEKYLTDLEKKISSKVGLNISIKHRNNKGQFCIKYETNEQLKIICSLLGENDFEY
Sbjct: 241 EGSREKEKYLTDLEKKISSKVGLNISIKHRNNKGQFCIKYETNEQLKIICSLLGENDFEY 300
>gi|254780922|ref|YP_003065335.1| glucose-1-phosphate thymidylyltransferase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 292
Score = 29.6 bits (65), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 78/168 (46%), Gaps = 25/168 (14%)
Query: 1 MSNNYSKRRLGRGLAALIGEVNQSIDSPEKKTET-IPESQDCISIHSIVPNPHNPRN--- 56
+S+ + K R R A ++G + +P++ + S ISI P+NP++
Sbjct: 116 ISDIFHKARARRNSATVVG---CHVQNPQRYGVVEVDSSNQAISIEE---KPNNPKSSFA 169
Query: 57 ----YFESEGLEDLCQSIK--SHGIIQPLIVRA--IDNGLYKIIA---GERRFRAAKMAS 105
YF + + ++ ++I+ + G ++ V + +D GL + G F A S
Sbjct: 170 VTGIYFYDQEVVNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPES 229
Query: 106 LSEVPVIIRNVDNKSSLEIAIVENVQ-RKDLNPLEEALGYEQLISEYG 152
L + V +RN++N+ L +A E + R D + E+ + QLI +G
Sbjct: 230 LLDTAVFVRNIENRLGLYVACPEEIAYRHDF--INES-QFFQLIDHFG 274
>gi|254780724|ref|YP_003065137.1| component of type IV pilus [Candidatus Liberibacter asiaticus str.
psy62]
Length = 483
Score = 28.5 bits (62), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 63 LEDLCQSIKSHGIIQPLIVR 82
EDLC I +G +QPLI R
Sbjct: 114 FEDLCNDILGYGPLQPLIAR 133
>gi|254781034|ref|YP_003065447.1| hypothetical protein CLIBASIA_04680 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 344
Score = 27.3 bits (59), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 127 VENVQRKDLNPL-EEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREM 185
+ N Q ++ PL EE +QLIS+ DI + + K + AN LR V +
Sbjct: 125 LANTQNFNIKPLLEEIASLKQLISDLSKNYQDIVTRLTKMETLTANPLRNPNTQRMVSLL 184
Query: 186 IRKEEISLGHARTLVST 202
I K + G +L +T
Sbjct: 185 ILKNALDKGEYSSLNTT 201
>gi|254780326|ref|YP_003064739.1| bifunctional ornithine acetyltransferase/N-acetylglutamate synthase
protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 416
Score = 24.3 bits (51), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Query: 65 DLCQSIKSHGIIQPLIVRAIDNGLYKIIAGER-----RFRAAKMASL 106
D C+ SHGI + LIV ++G+ G+R RF A ++ L
Sbjct: 68 DFCKGNLSHGIARALIV---NSGIANAFTGKRGRDTVRFIAKAVSEL 111
>gi|254780750|ref|YP_003065163.1| DNA mismatch repair protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 920
Score = 22.7 bits (47), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 9/45 (20%)
Query: 241 EGSREKEKYLTDLEKKISSKVGL---------NISIKHRNNKGQF 276
+ S ++ + L D K+I + + L N+ IKH NN G F
Sbjct: 458 DASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKHNNNLGYF 502
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.313 0.132 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 193,130
Number of Sequences: 1233
Number of extensions: 8037
Number of successful extensions: 33
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 26
Number of HSP's gapped (non-prelim): 18
length of query: 300
length of database: 328,796
effective HSP length: 73
effective length of query: 227
effective length of database: 238,787
effective search space: 54204649
effective search space used: 54204649
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 38 (19.2 bits)