HHsearch alignment for GI: 254780806 and conserved domain: COG0541
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion].
Probab=98.70 E-value=3.9e-08 Score=67.00 Aligned_cols=164 Identities=25% Similarity=0.322 Sum_probs=87.4
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCCC
Q ss_conf 68749999808898888999999999999879959999878776801121246333454116763025771210244444
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTAI 83 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~~ 83 (265)
T Consensus 98 ~~P~vImmv-GLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~--------------eQL---~~La~---q--- 153 (451)
T COG0541 98 KPPTVILMV-GLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAI--------------EQL---KQLAE---Q--- 153 (451)
T ss_pred CCCEEEEEE-ECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHH--------------HHH---HHHHH---H---
T ss_conf 998589998-15679748689999999997499458985056786899--------------999---99998---6---
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCC--CC------HHHHHHHCCCCCCC
Q ss_conf 42000148874577500012322221023332247651027820331013332222--10------11233100111112
Q gi|254780806|r 84 PNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLT--MN------AMAAADSILVPLQC 155 (265)
Q Consensus 84 ~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~--~~------al~aad~viip~~p 155 (265)
T Consensus 154 ~~v~~f~~~~-----------~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDa 222 (451)
T COG0541 154 VGVPFFGSGT-----------EKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDA 222 (451)
T ss_pred CCCCEECCCC-----------CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEC
T ss_conf 0985316778-----------89979999999999997499889996887330309999999999855398748998764
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCC
Q ss_conf 3113788875335777655432026774310020231253100112689998808520
Q gi|254780806|r 156 EFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKV 213 (265)
Q Consensus 156 ~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v 213 (265)
T Consensus 223 m~--GQdA~-------~~A~aF~e~l~itGvIlTKlDGdaRGGa--ALS~~~~tg~PI 269 (451)
T COG0541 223 MI--GQDAV-------NTAKAFNEALGITGVILTKLDGDARGGA--ALSARAITGKPI 269 (451)
T ss_pred CC--CHHHH-------HHHHHHHHHCCCCEEEEECCCCCCCCHH--HHHHHHHHCCCE
T ss_conf 44--56789-------9999986626986499971467876228--885699878985