HHsearch alignment for GI: 254780806 and conserved domain: COG1348
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism].
Probab=99.96 E-value=1.1e-28 Score=187.03 Aligned_cols=239 Identities=24% Similarity=0.358 Sum_probs=178.9
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECC-----CCHHHCCCCC
Q ss_conf 49999808898888999999999999879959999878776801121246333454116763025-----7712102444
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEE-----KNINQILIQT 81 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~-----~~l~~~i~~~ 81 (265)
T Consensus 2 r~iAiY-GKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaDSTr~Llg--g~~ipTVld~lre~~~~e~~~ledvi~-~ 77 (278)
T COG1348 2 RQIAIY-GKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADSTRLLLG--GKAIPTVLDTLREKGEVEDLELEDVIF-T 77 (278)
T ss_pred CEEEEE-CCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHC--CCCCCHHHHHHHHCCCCCCCCHHHHEE-C
T ss_conf 379996-278767312677899999972981799747987632777747--866656999998618644588778212-0
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHH------HHHHCCCCCCC
Q ss_conf 444200014887457750001232222102333224765102782033101333222210112------33100111112
Q gi|254780806|r 82 AIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMA------AADSILVPLQC 155 (265)
Q Consensus 82 ~~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~------aad~viip~~p 155 (265)
T Consensus 78 Gf~gv~CVEsGGPepGvGCAGRGVitai~~Le~-lg-af~~~~DvviyDV---LGDVVCGGFAmPiReg~AdeiyIVtSg 152 (278)
T COG1348 78 GFGGVKCVESGGPEPGVGCAGRGVITAINLLEE-LG-AFEEDLDVVIYDV---LGDVVCGGFAMPIREGYADEIYIVTSG 152 (278)
T ss_pred CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHH-HC-CCCCCCCEEEEEC---CCCEEECCEEEEHHCCCCCEEEEEECC
T ss_conf 678537742599899988465119999999998-18-7301287899953---577347460002002666379999568
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE
Q ss_conf 31137888753357776554320267743100202312531001126899988085201562678688987773798579
Q gi|254780806|r 156 EFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAI 235 (265)
Q Consensus 156 ~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~ 235 (265)
T Consensus 153 e~MalYAANNI~kgi~k~a~~~~~--rLgGiIcNsR--~~~~e~e~v~~fa~~igt~li~-~vPr~~ivq~aE~~~kTvi 227 (278)
T COG1348 153 EMMALYAANNIAKGIRKYAKTGGV--RLGGIICNSR--SVDRERELVEAFAERLGTQLIH-FVPRDNIVQKAELNGKTVI 227 (278)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCC--CEEEEEECCC--CCCCHHHHHHHHHHHHCCCEEE-ECCCHHHHHHHHHCCCCHH
T ss_conf 358999988999999998733796--3145774577--7643799999999984885276-3351278899987486611
Q ss_pred EECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 997999899999999999999998
Q gi|254780806|r 236 IYDLKCAGSQAYLKLASELIQQER 259 (265)
Q Consensus 236 ~~~p~s~~a~~~~~la~el~~~~~ 259 (265)
T Consensus 228 e~~P~s~~a~~yr~LA~~I~~n~~ 251 (278)
T COG1348 228 EYAPDSNQAEEYRELAKKILENEK 251 (278)
T ss_pred HHCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 318462489999999999983778