HHsearch alignment for GI: 254780806 and conserved domain: COG1419
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion].
Probab=98.41 E-value=1.5e-06 Score=57.67 Aligned_cols=172 Identities=20% Similarity=0.302 Sum_probs=85.2
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHH--HCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCC
Q ss_conf 68749999808898888999999999999--8799599998787768011212463334541167630257712102444
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALA--AIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQT 81 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la--~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~ 81 (265)
T Consensus 201 ~~~~vi~LV-GPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYR-IGA~EQLk~Y-------------a~im------ 259 (407)
T COG1419 201 EQKRVIALV-GPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYR-IGAVEQLKTY-------------ADIM------ 259 (407)
T ss_pred CCCCEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCH-HHHHHHHHHH-------------HHHH------
T ss_conf 468579998-998875887999999999753257606899714411-5289999999-------------9986------
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCC--CCCCCCCHHH----HH--HHCCCCC
Q ss_conf 44420001488745775000123222210233322476510278203310133--3222210112----33--1001111
Q gi|254780806|r 82 AIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPS--FNLLTMNAMA----AA--DSILVPL 153 (265)
Q Consensus 82 ~~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~--~~~~~~~al~----aa--d~viip~ 153 (265)
T Consensus 260 ---~vp~~------------vv~~~---~el~~ai~--~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvl 319 (407)
T COG1419 260 ---GVPLE------------VVYSP---KELAEAIE--ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVL 319 (407)
T ss_pred ---CCCEE------------EECCH---HHHHHHHH--HHHCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf ---99559------------96399---99999999--853188899968998833789999999997035662179998
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHH-HHCCC--CCCCCCCCCHHHHH
Q ss_conf 123113788875335777655432026774310020231253100112689998-80852--01562678688987
Q gi|254780806|r 154 QCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRK-NLGGK--VYNTVIPRNVRISE 226 (265)
Q Consensus 154 ~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~-~~~~~--v~~~~Ip~~~~i~~ 226 (265)
T Consensus 320 sat-~K~~dlk---ei~~~f~-----~~~i~~~I~TKlDET~s~G~~-~s~~~e~~~PV~YvT~GQ~VPeDI~va~ 385 (407)
T COG1419 320 SAT-TKYEDLK---EIIKQFS-----LFPIDGLIFTKLDETTSLGNL-FSLMYETRLPVSYVTNGQRVPEDIVVAN 385 (407)
T ss_pred ECC-CCHHHHH---HHHHHHC-----CCCCCEEEEECCCCCCCHHHH-HHHHHHHCCCEEEEECCCCCCCHHHHCC
T ss_conf 457-6468899---9999724-----588661689713356763389-9999996897499717987870355358