HHsearch alignment for GI: 254780806 and conserved domain: COG1419

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion].
Probab=98.41  E-value=1.5e-06  Score=57.67  Aligned_cols=172  Identities=20%  Similarity=0.302  Sum_probs=85.2

Q ss_pred             CCCEEEEEECCCCCCCHHHHHHHHHHHHH--HCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCC
Q ss_conf             68749999808898888999999999999--8799599998787768011212463334541167630257712102444
Q gi|254780806|r    4 KKSRIITIANQKGGVGKTTTAINLSTALA--AIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQT   81 (265)
Q Consensus         4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la--~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~   81 (265)
T Consensus       201 ~~~~vi~LV-GPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYR-IGA~EQLk~Y-------------a~im------  259 (407)
T COG1419         201 EQKRVIALV-GPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYR-IGAVEQLKTY-------------ADIM------  259 (407)
T ss_pred             CCCCEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCH-HHHHHHHHHH-------------HHHH------
T ss_conf             468579998-998875887999999999753257606899714411-5289999999-------------9986------


Q ss_pred             CCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCC--CCCCCCCHHH----HH--HHCCCCC
Q ss_conf             44420001488745775000123222210233322476510278203310133--3222210112----33--1001111
Q gi|254780806|r   82 AIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPS--FNLLTMNAMA----AA--DSILVPL  153 (265)
Q Consensus        82 ~~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~--~~~~~~~al~----aa--d~viip~  153 (265)
T Consensus       260 ---~vp~~------------vv~~~---~el~~ai~--~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvl  319 (407)
T COG1419         260 ---GVPLE------------VVYSP---KELAEAIE--ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVL  319 (407)
T ss_pred             ---CCCEE------------EECCH---HHHHHHHH--HHHCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf             ---99559------------96399---99999999--853188899968998833789999999997035662179998


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHH-HHCCC--CCCCCCCCCHHHHH
Q ss_conf             123113788875335777655432026774310020231253100112689998-80852--01562678688987
Q gi|254780806|r  154 QCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRK-NLGGK--VYNTVIPRNVRISE  226 (265)
Q Consensus       154 ~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~-~~~~~--v~~~~Ip~~~~i~~  226 (265)
T Consensus       320 sat-~K~~dlk---ei~~~f~-----~~~i~~~I~TKlDET~s~G~~-~s~~~e~~~PV~YvT~GQ~VPeDI~va~  385 (407)
T COG1419         320 SAT-TKYEDLK---EIIKQFS-----LFPIDGLIFTKLDETTSLGNL-FSLMYETRLPVSYVTNGQRVPEDIVVAN  385 (407)
T ss_pred             ECC-CCHHHHH---HHHHHHC-----CCCCCEEEEECCCCCCCHHHH-HHHHHHHCCCEEEEECCCCCCCHHHHCC
T ss_conf             457-6468899---9999724-----588661689713356763389-9999996897499717987870355358