HHsearch alignment for GI: 254780806 and conserved domain: COG4963
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion].
Probab=99.97 E-value=1.5e-30 Score=197.76 Aligned_cols=236 Identities=23% Similarity=0.333 Sum_probs=191.3
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCC-CCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCC-
Q ss_conf 687499998088988889999999999998-7995999987877-6801121246333454116763025771210244-
Q gi|254780806|r 4 KKSRIITIANQKGGVGKTTTAINLSTALAA-IGENVLLIDLDPQ-GNASTGLGIELYDRKYSSYDLLIEEKNINQILIQ- 80 (265)
Q Consensus 4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~-~g~rVllID~D~q-~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~- 80 (265)
T Consensus 102 ~~~r~iafl~akgg~g~stlA~n~a~~l~~~~~~~v~L~DL~~~~G~~~~~l~~~~a---~~i~~~~~~peRLDq~lld~ 178 (366)
T COG4963 102 QQGRELAFLGAKGGVGTSTLAHNLAKGLAILSGAAVLLVDLDLQGGTAALYLDQDPA---FGIAEAVKQPERLDQVLLDS 178 (366)
T ss_pred HHCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHCCCCCH---HHHHHHHCCHHHHHHHHHHH
T ss_conf 103289999605886668999999999864148738999768887612343078721---45898860978760787778
Q ss_pred ---CCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCC
Q ss_conf ---44442000148874577500012322221023332247651027820331013332222101123310011111231
Q gi|254780806|r 81 ---TAIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEF 157 (265)
Q Consensus 81 ---~~~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~aad~viip~~p~~ 157 (265)
T Consensus 179 ~~~~~~~~l~ll~a~~~~~~~~d~~~~---~~~~L----l~~~~~~~~~vV~Dlp~~~~~~t~~vL~~Sd~iviv~e~sl 251 (366)
T COG4963 179 LLTRLASGLKLLAAPTELAKNYDLKTG---AVERL----LDLLRGSFDFVVVDLPNIWTDWTRQVLSGSDEIVIVAEPSL 251 (366)
T ss_pred HHHCCCCCCEEECCCCCHHHHCCCCCC---HHHHH----HHHHHCCCCEEEECCCCCCCHHHHHHHHCCCEEEEEECCCH
T ss_conf 986168876330377445652153312---69999----99764028838971897662589999862884999963638
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHH-HHHHHCCCCEEE
Q ss_conf 1378887533577765543202677431002023125310011268999880852015626786889-877737985799
Q gi|254780806|r 158 FALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRI-SEAPSYGKPAII 236 (265)
Q Consensus 158 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~~~i-~~a~~~g~pv~~ 236 (265)
T Consensus 252 ~slR~ak~lld~l~~~r~~----~~~p~lv~n~~~~~~~~~---~~dl~~~~~i~~~~-~~p~d~~~~~~A~n~g~~l~E 323 (366)
T COG4963 252 ASLRNAKELLDELKRLRPN----DPKPILVLNRVGVPKRPE---PSDLEEILGIESLL-VLPFDPALFGDAANNGRMLSE 323 (366)
T ss_pred HHHHHHHHHHHHHHHHCCC----CCCCEEEEEECCCCCCCC---HHHHHHHHCCCHHC-CCCCCCHHHHHHHCCCCCCCC
T ss_conf 9899999999999973779----889568865227888999---99998884884001-366770544444206960222
Q ss_pred ECCCCHHHHHHHHHHHHHHHH
Q ss_conf 979998999999999999999
Q gi|254780806|r 237 YDLKCAGSQAYLKLASELIQQ 257 (265)
Q Consensus 237 ~~p~s~~a~~~~~la~el~~~ 257 (265)
T Consensus 324 ~~~~~~~~k~l~~la~~l~~~ 344 (366)
T COG4963 324 VDPGSPAAKALAQLAQSLGGR 344 (366)
T ss_pred CCCCCHHHHHHHHHHHHHCCC
T ss_conf 377875889999999985376