HHsearch alignment for GI: 254780806 and conserved domain: PRK05703
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=98.70 E-value=6.3e-08 Score=65.75 Aligned_cols=168 Identities=24% Similarity=0.360 Sum_probs=84.7
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHH-CCC-CEEEEECCCCC-CCCHHHCCCCCCCCCCEEEEEECCCCHHHCCC
Q ss_conf 7687499998088988889999999999998-799-59999878776-80112124633345411676302577121024
Q gi|254780806|r 3 EKKSRIITIANQKGGVGKTTTAINLSTALAA-IGE-NVLLIDLDPQG-NASTGLGIELYDRKYSSYDLLIEEKNINQILI 79 (265)
Q Consensus 3 ~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~-~g~-rVllID~D~q~-~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~ 79 (265)
T Consensus 207 ~~~~~vvalV-GPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~DtyRigA~e--QL------------------------ 259 (412)
T PRK05703 207 LEQGGVVALV-GPTGVGKTTTLAKLAARYALEEGKDKVALITLDTYRIGAVE--QL------------------------ 259 (412)
T ss_pred CCCCCEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHH--HH------------------------
T ss_conf 4567369998-88887567699999999999729981799983767777999--99------------------------
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCC---C----CHHHH--HHHCC
Q ss_conf 444442000148874577500012322221023332247651027820331013332222---1----01123--31001
Q gi|254780806|r 80 QTAIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLT---M----NAMAA--ADSIL 150 (265)
Q Consensus 80 ~~~~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~---~----~al~a--ad~vi 150 (265)
T Consensus 260 k~Ya~i----------lgvp~~v~~~~---~~l~~al~~-~-~~~dlILIDTaG-~s~~d~~~~~eL~~~~~~~~~~~~~ 323 (412)
T PRK05703 260 KTYAKI----------MGIPVKVAYDP---KELAKALEQ-L-ANCDLILIDTAG-RSQRDPRLISELKALIENSKPIDVY 323 (412)
T ss_pred HHHHHH----------CCCEEEEECCH---HHHHHHHHH-H-CCCCEEEEECCC-CCCCCHHHHHHHHHHHHHCCCCCEE
T ss_conf 999997----------19737984799---999999987-1-589979996898-8978999999999998624887189
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCC----CCCCCCCCHHH
Q ss_conf 111123113788875335777655432026774310020231253100112689998808520----15626786889
Q gi|254780806|r 151 VPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKV----YNTVIPRNVRI 224 (265)
Q Consensus 151 ip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v----~~~~Ip~~~~i 224 (265)
T Consensus 324 LVlsat~-~~~dl~~i---~~~f~-----~~~~~~lI~TKlDEt~~~G~-il~~~~~~-~lplsy~t~GQ~VPeDi~~ 390 (412)
T PRK05703 324 LVLSATT-KYRDLKDI---VKHFS-----RLPLDGLILTKLDETSSLGS-ILSLLIES-GLPISYLTDGQRVPDDIKV 390 (412)
T ss_pred EEECCCC-CHHHHHHH---HHHHC-----CCCCCEEEEEEECCCCCCCH-HHHHHHHH-CCCEEEEECCCCCHHHHHC
T ss_conf 9975989-98999999---99846-----79998799971128998629-99999998-8796999469997243422