HHsearch alignment for GI: 254780806 and conserved domain: PRK10867

>PRK10867 signal recognition particle protein; Provisional.
Probab=98.56  E-value=2.3e-07  Score=62.44  Aligned_cols=163  Identities=19%  Similarity=0.256  Sum_probs=83.2

Q ss_pred             CCCEEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCH-HHCCCCCCCCCCEEEEEECCCCHHHCCCCC
Q ss_conf             687499998088988889999999999998-799599998787768011-212463334541167630257712102444
Q gi|254780806|r    4 KKSRIITIANQKGGVGKTTTAINLSTALAA-IGENVLLIDLDPQGNAST-GLGIELYDRKYSSYDLLIEEKNINQILIQT   81 (265)
Q Consensus         4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~-~g~rVllID~D~q~~~~~-~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~   81 (265)
T Consensus        98 ~~p~VIm~v-GLqGsGKTTT~aKLA~~lk~k~~k~vllvaaDt~RpaA~eQL~------------------~la------  152 (453)
T PRK10867         98 QPPAVVLMA-GLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLE------------------TLA------  152 (453)
T ss_pred             CCCEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH------------------HHH------
T ss_conf             999699997-4688851858999999999738983798558877058999999------------------999------


Q ss_pred             CCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCC--CC------HHHHHHHCCCCC
Q ss_conf             4442000148874577500012322221023332247651027820331013332222--10------112331001111
Q gi|254780806|r   82 AIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLT--MN------AMAAADSILVPL  153 (265)
Q Consensus        82 ~~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~--~~------al~aad~viip~  153 (265)
T Consensus       153 ~~~~v~~~~~~~-----------~~dp~~ia~~a~~~ak~~~~DvvivDTAGRl~~d~~Lm~El~~i~~~~~P~e~llV~  221 (453)
T PRK10867        153 EQVGVDFFPSDV-----------GQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVV  221 (453)
T ss_pred             HHCCCCEECCCC-----------CCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             851980436788-----------998899999999999977999999978760121088899999998763787137974


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCC
Q ss_conf             123113788875335777655432026774310020231253100112689998808520
Q gi|254780806|r  154 QCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKV  213 (265)
Q Consensus       154 ~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v  213 (265)
T Consensus       222 Da~~-G-Q~---a~~~a----~~F~~~~~~~gvIlTKlDgdarGG~--alS~~~~t~~PI  270 (453)
T PRK10867        222 DAMT-G-QD---AANTA----KAFNEALPLTGVVLTKVDGDARGGA--ALSIRHITGKPI  270 (453)
T ss_pred             ECCC-C-HH---HHHHH----HHHHHHCCCCEEEEECCCCCCCCHH--HHHHHHHHCCCC
T ss_conf             3223-5-66---89999----9999855987078750467876138--989999978696