HHsearch alignment for GI: 254780806 and conserved domain: PRK13232
>PRK13232 nifH nitrogenase reductase; Reviewed.
Probab=100.00 E-value=1.2e-42 Score=268.41 Aligned_cols=237 Identities=23% Similarity=0.376 Sum_probs=181.2
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHH-CCCCCCCCCCEEEEEECC----CCHHHCCCCC
Q ss_conf 49999808898888999999999999879959999878776801121-246333454116763025----7712102444
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGL-GIELYDRKYSSYDLLIEE----KNINQILIQT 81 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l-~~~~~~~~~ti~~~l~~~----~~l~~~i~~~ 81 (265)
T Consensus 2 ~~iaiy-GKGGVGKSTTt~NLaAALA~~GkkVL~IgcDPk~dsT~~l~gg~~---~~tvld~l~~~~~~~~~l~~v~~-~ 76 (273)
T PRK13232 2 RQIAIY-GKGGIGKSTTTQNLTAALSTMGNKILLVGCDPKADSTRMLLGGLN---QKTVLDTLRSEGDEGVDLDVVMQ-P 76 (273)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCC---CCCHHHHHHHCCCCCCCHHHEEE-C
T ss_conf 579997-998665887899999999977996999897884427778858998---88799999861856563666154-2
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHH------HHHHCCCCCCC
Q ss_conf 444200014887457750001232222102333224765102782033101333222210112------33100111112
Q gi|254780806|r 82 AIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMA------AADSILVPLQC 155 (265)
Q Consensus 82 ~~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~------aad~viip~~p 155 (265)
T Consensus 77 g~~gv~cve~ggp~~g~gcagrgii~~-~~lle~l~-~~~~~~Dyvl~Dv---lgdvvcggfa~P~~~~~A~evlIVts~ 151 (273)
T PRK13232 77 GFGDIKCVESGGPEPGVGCAGRGIITS-IGLLENLG-AYTDDLDYVFYDV---LGDVVCGGFAMPIREGKAKEIYIVASG 151 (273)
T ss_pred CCCCEEEEECCCCCCCCCCCCHHHHHH-HHHHHHCC-CCCCCCCEEEEEC---CCCCCCCCCCCCCCCCCCCEEEEEECC
T ss_conf 889738986899876765453047888-88999708-3214798899941---473323653144201657689998076
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE
Q ss_conf 31137888753357776554320267743100202312531001126899988085201562678688987773798579
Q gi|254780806|r 156 EFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAI 235 (265)
Q Consensus 156 ~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~ 235 (265)
T Consensus 152 E~~slyaannI~k~i~~~~~~---~~rl~GiI~n~r~--~~~~~e~v~~fa~~~g~~vi~-~IPr~~~v~~A~~~g~tvi 225 (273)
T PRK13232 152 ELMAIYAANNICKGLAKFAKG---GARLGGIICNSRN--VDGERELLEAFAKKLGSQLIH-FVPRDNIVQRAEINRKTVI 225 (273)
T ss_pred CHHHHHHHHHHHHHHHHHHHC---CCCEEEEEEECCC--CCCHHHHHHHHHHHCCCCEEE-ECCCCHHHHHHHHCCCEEE
T ss_conf 088899999999999999621---8850148850557--763899999999971996699-7899778876487298358
Q ss_pred EECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 997999899999999999999998
Q gi|254780806|r 236 IYDLKCAGSQAYLKLASELIQQER 259 (265)
Q Consensus 236 ~~~p~s~~a~~~~~la~el~~~~~ 259 (265)
T Consensus 226 e~~P~S~~A~aY~~LA~~I~~~~~ 249 (273)
T PRK13232 226 DFDPESNQAKEYLTLAHNVQNNDK 249 (273)
T ss_pred EECCCCHHHHHHHHHHHHHHHCCC
T ss_conf 979999799999999999985899