HHsearch alignment for GI: 254780806 and conserved domain: PRK13235

>PRK13235 nifH nitrogenase reductase; Reviewed.
Probab=100.00  E-value=4.1e-42  Score=265.33  Aligned_cols=238  Identities=21%  Similarity=0.327  Sum_probs=180.2

Q ss_pred             EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHH-CCCCCCCCCCEEEEEEC---CCCHHHCCCCCC
Q ss_conf             49999808898888999999999999879959999878776801121-24633345411676302---577121024444
Q gi|254780806|r    7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGL-GIELYDRKYSSYDLLIE---EKNINQILIQTA   82 (265)
Q Consensus         7 kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l-~~~~~~~~~ti~~~l~~---~~~l~~~i~~~~   82 (265)
T Consensus         2 ~~iaiy-GKGGVGKSTtt~NLaAALA~~GkkVl~IgcDPk~dsT~~L~gg~---~~~tvld~l~~~~~~~~ledvi~-~g   76 (274)
T PRK13235          2 RKVAIY-GKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKADSTRLLLGGL---QQKTVLDTLREEGEDVELEDIIK-EG   76 (274)
T ss_pred             CEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHCCC---CCCCHHHHHHHCCCCCCHHHHEE-EC
T ss_conf             679997-99855476789999999997899799989898453667873899---89978999986287767789443-17


Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-HCCCCCCEEEECCCCCCCCCCHHH------HHHHCCCCCCC
Q ss_conf             44200014887457750001232222102333224765-102782033101333222210112------33100111112
Q gi|254780806|r   83 IPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQL-TSDFSYIFLDCPPSFNLLTMNAMA------AADSILVPLQC  155 (265)
Q Consensus        83 ~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l-~~~yD~IiiD~pp~~~~~~~~al~------aad~viip~~p  155 (265)
T Consensus        77 ~~gi~cveaggp~pg~gcagrgii~~~~~L~-~l~~~~~~~~~DyVl~Dv---LGdvvcggFa~pir~~~A~eV~IVts~  152 (274)
T PRK13235         77 YGNTRCTESGGPEPGVGCAGRGIITSVNLLE-QLGAYDDEWNLDYVFYDV---LGDVVCGGFAMPIRDGKAEEIYIVCSG  152 (274)
T ss_pred             CCCEEEEECCCCCCCCCCCCCHHHHHHHHHH-HCCCCCCCCCCCEEEEEC---CCCCCCCCCCCCCCCCCCCEEEEEECC
T ss_conf             8981898689987566757631525899998-817754335776899813---785312451155100658789999168


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE
Q ss_conf             31137888753357776554320267743100202312531001126899988085201562678688987773798579
Q gi|254780806|r  156 EFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAI  235 (265)
Q Consensus       156 ~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~  235 (265)
T Consensus       153 E~~AL~aannI~k~i~~~~~~~~--~~l~Gii~N~r~~~--~~~~~v~~fa~~~g~~vi~-~IPr~~~V~~Ae~~~~tVi  227 (274)
T PRK13235        153 EMMAMYAANNICKGILKYADAGG--VRLGGLICNSRKVD--NEREMIEELARKLGTQMIH-FVPRDNMVQRAEINRKTVI  227 (274)
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCC--CEEEEEEEECCCCC--CHHHHHHHHHHHCCCCEEE-ECCCCHHHHHHHHCCCEEE
T ss_conf             36899999999999999974379--54889997367787--5789999999974993699-7589458899987397789


Q ss_pred             EECCCCHHHHHHHHHHHHHHHHH
Q ss_conf             99799989999999999999999
Q gi|254780806|r  236 IYDLKCAGSQAYLKLASELIQQE  258 (265)
Q Consensus       236 ~~~p~s~~a~~~~~la~el~~~~  258 (265)
T Consensus       228 e~~P~S~~A~~Yr~LA~~I~~n~  250 (274)
T PRK13235        228 DYDPTHGQADEYRALARKIDENE  250 (274)
T ss_pred             EECCCCHHHHHHHHHHHHHHHCC
T ss_conf             97899879999999999998389