HHsearch alignment for GI: 254780806 and conserved domain: PRK13235
>PRK13235 nifH nitrogenase reductase; Reviewed.
Probab=100.00 E-value=4.1e-42 Score=265.33 Aligned_cols=238 Identities=21% Similarity=0.327 Sum_probs=180.2
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHH-CCCCCCCCCCEEEEEEC---CCCHHHCCCCCC
Q ss_conf 49999808898888999999999999879959999878776801121-24633345411676302---577121024444
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGL-GIELYDRKYSSYDLLIE---EKNINQILIQTA 82 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l-~~~~~~~~~ti~~~l~~---~~~l~~~i~~~~ 82 (265)
T Consensus 2 ~~iaiy-GKGGVGKSTtt~NLaAALA~~GkkVl~IgcDPk~dsT~~L~gg~---~~~tvld~l~~~~~~~~ledvi~-~g 76 (274)
T PRK13235 2 RKVAIY-GKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKADSTRLLLGGL---QQKTVLDTLREEGEDVELEDIIK-EG 76 (274)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHCCC---CCCCHHHHHHHCCCCCCHHHHEE-EC
T ss_conf 679997-99855476789999999997899799989898453667873899---89978999986287767789443-17
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-HCCCCCCEEEECCCCCCCCCCHHH------HHHHCCCCCCC
Q ss_conf 44200014887457750001232222102333224765-102782033101333222210112------33100111112
Q gi|254780806|r 83 IPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQL-TSDFSYIFLDCPPSFNLLTMNAMA------AADSILVPLQC 155 (265)
Q Consensus 83 ~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l-~~~yD~IiiD~pp~~~~~~~~al~------aad~viip~~p 155 (265)
T Consensus 77 ~~gi~cveaggp~pg~gcagrgii~~~~~L~-~l~~~~~~~~~DyVl~Dv---LGdvvcggFa~pir~~~A~eV~IVts~ 152 (274)
T PRK13235 77 YGNTRCTESGGPEPGVGCAGRGIITSVNLLE-QLGAYDDEWNLDYVFYDV---LGDVVCGGFAMPIRDGKAEEIYIVCSG 152 (274)
T ss_pred CCCEEEEECCCCCCCCCCCCCHHHHHHHHHH-HCCCCCCCCCCCEEEEEC---CCCCCCCCCCCCCCCCCCCEEEEEECC
T ss_conf 8981898689987566757631525899998-817754335776899813---785312451155100658789999168
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE
Q ss_conf 31137888753357776554320267743100202312531001126899988085201562678688987773798579
Q gi|254780806|r 156 EFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAI 235 (265)
Q Consensus 156 ~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~ 235 (265)
T Consensus 153 E~~AL~aannI~k~i~~~~~~~~--~~l~Gii~N~r~~~--~~~~~v~~fa~~~g~~vi~-~IPr~~~V~~Ae~~~~tVi 227 (274)
T PRK13235 153 EMMAMYAANNICKGILKYADAGG--VRLGGLICNSRKVD--NEREMIEELARKLGTQMIH-FVPRDNMVQRAEINRKTVI 227 (274)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCC--CEEEEEEEECCCCC--CHHHHHHHHHHHCCCCEEE-ECCCCHHHHHHHHCCCEEE
T ss_conf 36899999999999999974379--54889997367787--5789999999974993699-7589458899987397789
Q ss_pred EECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99799989999999999999999
Q gi|254780806|r 236 IYDLKCAGSQAYLKLASELIQQE 258 (265)
Q Consensus 236 ~~~p~s~~a~~~~~la~el~~~~ 258 (265)
T Consensus 228 e~~P~S~~A~~Yr~LA~~I~~n~ 250 (274)
T PRK13235 228 DYDPTHGQADEYRALARKIDENE 250 (274)
T ss_pred EECCCCHHHHHHHHHHHHHHHCC
T ss_conf 97899879999999999998389