HHsearch alignment for GI: 254780806 and conserved domain: TIGR00313
>TIGR00313 cobQ cobyric acid synthase CobQ; InterPro: IPR004459 Cobyric acid synthase (CobQ) catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolysed for each amidation .; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process.
Probab=98.69 E-value=2.4e-08 Score=68.23 Aligned_cols=198 Identities=16% Similarity=0.194 Sum_probs=105.6
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-CCCCHHHCCCCCCCCCCEEEEEEC-------CCCHHHCCCCCC
Q ss_conf 980889888899999999999987995999987877-680112124633345411676302-------577121024444
Q gi|254780806|r 11 IANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQ-GNASTGLGIELYDRKYSSYDLLIE-------EKNINQILIQTA 82 (265)
Q Consensus 11 v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q-~~~~~~l~~~~~~~~~ti~~~l~~-------~~~l~~~i~~~~ 82 (265)
T Consensus 3 V~GTsS~AGKs~l~AaLCRiL~rrGy~VAPFKs--QNMSLNSfvt--~~~~EiA~AQ~~QA~AAGieP~~~mNPvLLK-P 77 (502)
T TIGR00313 3 VVGTSSSAGKSLLTAALCRILARRGYRVAPFKS--QNMSLNSFVT--AEGGEIAIAQALQALAAGIEPSVHMNPVLLK-P 77 (502)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHH--HHHHHHHHHC--CCCCEEEHHHHHHHHHCCCCCCCCCCCCCCC-C
T ss_conf 420115402899999999998527881278501--1010133311--3787551376899986387886234871016-7
Q ss_pred CCCEE--ECCCCCCCCCCCCCCCCCCCCCHHHHHHHH---HHHHCCCCCCEEEECCCCCCCC----------CCHHHHHH
Q ss_conf 44200--014887457750001232222102333224---7651027820331013332222----------10112331
Q gi|254780806|r 83 IPNLS--IIPSTMDLLGIEMILGGEKDRLFRLDKALS---VQLTSDFSYIFLDCPPSFNLLT----------MNAMAAAD 147 (265)
Q Consensus 83 ~~~l~--iipa~~~~~~~~~~l~~~~~~~~~l~~~l~---~~l~~~yD~IiiD~pp~~~~~~----------~~al~aad 147 (265)
T Consensus 78 kgdf~SQviv~G~a~g~~~~~~Y-~~~~~d~~~~~i~eSle~L~~~Yd~vv~EGAGS~AEINL~~rDLaN~~iA~~~~A~ 156 (502)
T TIGR00313 78 KGDFTSQVIVHGRAVGDMNAQEY-YKNKVDFLLKAIKESLEILAEEYDLVVIEGAGSPAEINLKERDLANMRIAELADAD 156 (502)
T ss_pred CCCCEEEEEEEEECCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCC
T ss_conf 88846678984112466761567-77999999999999998752028889982688710005331572247898643976
Q ss_pred HCCCCCCCCC----HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf 0011111231----137888753357776554320267743100202312531001126899988085201562678688
Q gi|254780806|r 148 SILVPLQCEF----FALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVR 223 (265)
Q Consensus 148 ~viip~~p~~----~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~~~ 223 (265)
T Consensus 157 ~-iLvADIDRGGVFAsi~GTl~LL~------~~~--r~liKG~vINkfRG~~~vL~~GI~~lEelTGiPVLG-v~PY~~~ 226 (502)
T TIGR00313 157 V-ILVADIDRGGVFASIYGTLKLLP------EEE--RKLIKGIVINKFRGNVDVLESGIEKLEELTGIPVLG-VLPYDEN 226 (502)
T ss_pred E-EEEEECCCCCCHHHHHHHHHHCC------CCC--CCEECEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE-EEECCCC
T ss_conf 7-99975077743243374666188------345--750030688354687244344568998854842344-6501257
Q ss_pred H
Q ss_conf 9
Q gi|254780806|r 224 I 224 (265)
Q Consensus 224 i 224 (265)
T Consensus 227 l 227 (502)
T TIGR00313 227 L 227 (502)
T ss_pred C
T ss_conf 7