HHsearch alignment for GI: 254780806 and conserved domain: TIGR01969
>TIGR01969 minD_arch cell division ATPase MinD; InterPro: IPR010224 Proper placement of the bacterial cell division site requires the site-specific inactivation of other potential division sites. In Escherichia coli, selection of the correct mid-cell site is mediated by the MinC, MinD and MinE proteins. Several members of this family are found in archaeal genomes but their function is uncharacterised. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. This entry represents the archaeal MinD family. The exact roles of the various archaeal MinD homologs are unknown. .
Probab=100.00 E-value=0 Score=349.67 Aligned_cols=231 Identities=29% Similarity=0.497 Sum_probs=202.0
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCCCCC
Q ss_conf 499998088988889999999999998799599998787-7680112124633345411676302577121024444442
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDP-QGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTAIPN 85 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~-q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~~~~ 85 (265)
T Consensus 1 r~I~iASGKGGtGKTT~tANLgVALA~~Gk~V~~~DADI~MANL~LiLgmE--~~~VTLhDVLAGeA~i~DAIY~gp~Gn 78 (258)
T TIGR01969 1 RIITIASGKGGTGKTTITANLGVALAKLGKKVLVLDADITMANLELILGME--DKPVTLHDVLAGEADIKDAIYEGPEGN 78 (258)
T ss_pred CEEEEEECCCCCCHHHEEEHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCC--CCCCCCCCCCCCCCCHHHHCCCCCCCC
T ss_conf 988999778898614000007788986097689994676677689884468--889675221344561001100288984
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 00014887457750001232222102333224765102782033101333222210112331001111123113788875
Q gi|254780806|r 86 LSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQ 165 (265)
Q Consensus 86 l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~aad~viip~~p~~~s~~~~~~ 165 (265)
T Consensus 79 V~V~PagvSLEg~rK------A~~~~L~dV~~-~i~~~~D~lLIDAPAGL~~~a~~Al~~a~elLLVvNPEi~SItDaLK 151 (258)
T TIGR01969 79 VKVIPAGVSLEGLRK------ADPDKLEDVLK-EIIDDTDFLLIDAPAGLERDAVTALAAADELLLVVNPEISSITDALK 151 (258)
T ss_pred EEEECCCCCHHHCCC------CCHHHHHHHHH-HHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHH
T ss_conf 478506122100012------68333289999-87204377887478983378999998618664866765446777889
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCEEECC-CHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCHHH
Q ss_conf 33577765543202677431002023125-31001126899988085201562678688987773798579997999899
Q gi|254780806|r 166 LLETVEEVRRTVNSALDIQGIILTMFDSR-NSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLKCAGS 244 (265)
Q Consensus 166 ~~~~i~~~~~~~~~~~~~~~iv~N~~~~~-~~~~~~~~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~~~~p~s~~a 244 (265)
T Consensus 152 ~k----~va~~lG--t~ilG~vlNRv~~~~tel~---~~eiE~iLevPVl~-~vPEDP~VR~AAa~G~P~V~~~P~SpAA 221 (258)
T TIGR01969 152 VK----IVAEKLG--TAILGVVLNRVTRDKTELG---REEIEAILEVPVLG-VVPEDPEVRRAAAFGEPVVVYSPNSPAA 221 (258)
T ss_pred HH----HHHHHCC--CCEEEEEEEECCCCCCCCC---HHHHHHHHCCCEEE-EECCCHHHHHHHHCCCCEEEECCCCHHH
T ss_conf 99----9987608--8324689960236666378---88999884797389-8569843445642485368847998789
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q gi|254780806|r 245 QAYLKLASELIQ 256 (265)
Q Consensus 245 ~~~~~la~el~~ 256 (265)
T Consensus 222 ~A~~eLA~~l~G 233 (258)
T TIGR01969 222 QAFMELAAELAG 233 (258)
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999718