HHsearch alignment for GI: 254780806 and conserved domain: cd00550
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=99.94 E-value=1e-27 Score=181.29 Aligned_cols=195 Identities=19% Similarity=0.269 Sum_probs=112.8
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEE----EEECCCCHHHCCCCCC
Q ss_conf 499998088988889999999999998799599998787768011212463334541167----6302577121024444
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYD----LLIEEKNINQILIQTA 82 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~----~l~~~~~l~~~i~~~~ 82 (265)
T Consensus 1 r~i-~~~GKGGVGKTT~AaalA~~lA~~G~kVLlvstDPahsLsd~f~~~~~~~~-~~v~~~~nL~a~eid~~~~~~~-~ 77 (254)
T cd00550 1 RYI-FFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAHSLSDSFNQEFGKGP-TPVKGVENLSAMEIDPQEALEE-Y 77 (254)
T ss_pred CEE-EEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHCCCCCCCC-CEECCCCCCEEEEECHHHHHHH-H
T ss_conf 989-996898554899999999999968994999958986448898488667887-1103668845787288999999-9
Q ss_pred CCC-EEECCCCCCCCCCCC----CC-CCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCC---CCC--------CHHH-
Q ss_conf 442-000148874577500----01-23222210233322476510278203310133322---221--------0112-
Q gi|254780806|r 83 IPN-LSIIPSTMDLLGIEM----IL-GGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNL---LTM--------NAMA- 144 (265)
Q Consensus 83 ~~~-l~iipa~~~~~~~~~----~l-~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~---~~~--------~al~- 144 (265)
T Consensus 78 ~~~v~~~~~~~~~~~~~~~~~~~~~~~PG~~E~~~l~~i~~~~~~~~yD~IViDtaPTGhtLrlL~lP~~l~~~~~~L~d 157 (254)
T cd00550 78 RQEVLEPIEANLLLEMLKGILEEELESPGIEEIAAFDEFSRYIDEAEYDVVVFDTAPTGHTLRLLSLPTVLSWAREILSD 157 (254)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHCHHHHHHHHHHCCC
T ss_conf 99999988632255668888999863985899999999999976069988998899856799875156999999985379
Q ss_pred -HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCC-----------HHHHHHHHHHHHHHC
Q ss_conf -331001111123113788875335777655432026774310020231253-----------100112689998808
Q gi|254780806|r 145 -AADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRN-----------SLSQQVVSDVRKNLG 210 (265)
Q Consensus 145 -aad~viip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~-----------~~~~~~~~~l~~~~~ 210 (265)
T Consensus 158 ~~~t~~~lV~~PE~~~v~Et~R~~~~L~~~------~i~v~~vvvN~v~p~~~~~~~~~~~r~~~q~~~l~~i~~~f~ 229 (254)
T cd00550 158 PERTSFRLVCIPEKMSLYETERAIQELAKY------GIDVDAVIVNQLLPEDVTNCPFLEARREIQQKYLEEIEELFS 229 (254)
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHC------CCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 565589999778721699999999999977------999897999588087768899999999999999999998705