HHsearch alignment for GI: 254780806 and conserved domain: cd00881
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=93.90 E-value=0.033 Score=32.39 Aligned_cols=82 Identities=13% Similarity=0.175 Sum_probs=47.7
Q ss_pred CCCCCEEEECCCCC--CCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCH-HHH
Q ss_conf 27820331013332--222101123310011111231137888753357776554320267743100202312531-001
Q gi|254780806|r 123 DFSYIFLDCPPSFN--LLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNS-LSQ 199 (265)
Q Consensus 123 ~yD~IiiD~pp~~~--~~~~~al~aad~viip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~-~~~ 199 (265)
T Consensus 61 ~~~i~~iDTPGh~~f~~~~~~~l~~aD~ailvVda~~G~~~qt~~---~~~~~~~-~~~--p~i-v~iNKiD~~~~~~~~ 133 (189)
T cd00881 61 DRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTRE---HLRIARE-GGL--PII-VAINKIDRVGEEDLE 133 (189)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHH---HHHHHHH-CCC--CEE-EEEECCCCCCHHHHH
T ss_conf 989999969981889999999986468569999879899878999---9999997-699--879-999897187756299
Q ss_pred HHHHHHHHHHCC
Q ss_conf 126899988085
Q gi|254780806|r 200 QVVSDVRKNLGG 211 (265)
Q Consensus 200 ~~~~~l~~~~~~ 211 (265)
T Consensus 134 ~~~~ei~~~l~~ 145 (189)
T cd00881 134 EVLREIKELLGL 145 (189)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999875