HHsearch alignment for GI: 254780806 and conserved domain: cd01125
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.63 E-value=0.036 Score=32.15 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=22.8
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99998088988889999999999998
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAA 33 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~ 33 (265)
T Consensus 2 ~v~~l~g~gG~GKS~lal~lAl~vA~ 27 (239)
T cd01125 2 YVSALVAPGGTGKSSLLLVLALAMAL 27 (239)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 38999808998889999999999975