HHsearch alignment for GI: 254780806 and conserved domain: cd01125

>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.63  E-value=0.036  Score=32.15  Aligned_cols=26  Identities=27%  Similarity=0.427  Sum_probs=22.8

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf             99998088988889999999999998
Q gi|254780806|r    8 IITIANQKGGVGKTTTAINLSTALAA   33 (265)
Q Consensus         8 vI~v~s~KGGvGKTT~a~nlA~~la~   33 (265)
T Consensus         2 ~v~~l~g~gG~GKS~lal~lAl~vA~   27 (239)
T cd01125           2 YVSALVAPGGTGKSSLLLVLALAMAL   27 (239)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHC
T ss_conf             38999808998889999999999975