HHsearch alignment for GI: 254780806 and conserved domain: cd01394

>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

Probab=96.28  E-value=0.0096  Score=35.51  Aligned_cols=37  Identities=35%  Similarity=0.453  Sum_probs=32.8

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             9999808898888999999999999879959999878
Q gi|254780806|r    8 IITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD   44 (265)
Q Consensus         8 vI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D   44 (265)
T Consensus        20 ~it~i~G~pG~GKStl~lq~a~~~~~~g~~v~YidtE   56 (218)
T cd01394          20 TVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE   56 (218)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             7999989999849999999999986369869999665