HHsearch alignment for GI: 254780806 and conserved domain: cd01883
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=91.46 E-value=0.12 Score=29.19 Aligned_cols=70 Identities=17% Similarity=0.189 Sum_probs=40.2
Q ss_pred CCCCCCEEEECCCCC--CCCCCHHHHHHHCCCCCCCCCHHHH-H---HHHHHHHHHHHHHHHHCCCCCCCCCCCEEECC
Q ss_conf 027820331013332--2221011233100111112311378-8---87533577765543202677431002023125
Q gi|254780806|r 122 SDFSYIFLDCPPSFN--LLTMNAMAAADSILVPLQCEFFALE-G---LSQLLETVEEVRRTVNSALDIQGIILTMFDSR 194 (265)
Q Consensus 122 ~~yD~IiiD~pp~~~--~~~~~al~aad~viip~~p~~~s~~-~---~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~ 194 (265)
T Consensus 75 ~~~~~~iiDtPGH~df~~~mi~g~~~ad~ailvvda~~g~~e~g~~~~~QTreH~~l~-~~lGi--k~iIVavNKMD~v 150 (219)
T cd01883 75 EKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTLGV--KQLIVAVNKMDDV 150 (219)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHH-HHCCC--CEEEEEEECCCCC
T ss_conf 9936999878972667889998775316689999857675103667776599999999-98499--7489999875368