HHsearch alignment for GI: 254780806 and conserved domain: cd01887
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=92.05 E-value=0.11 Score=29.22 Aligned_cols=78 Identities=13% Similarity=0.153 Sum_probs=39.9
Q ss_pred CCCCCEEEECCCCC--CCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHH
Q ss_conf 27820331013332--2221011233100111112311378887533577765543202677431002023125310011
Q gi|254780806|r 123 DFSYIFLDCPPSFN--LLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQ 200 (265)
Q Consensus 123 ~yD~IiiD~pp~~~--~~~~~al~aad~viip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~ 200 (265)
T Consensus 49 ~~~i~~iDTPGh~~f~~~~~~~~~~aD~~ilvvda~~g~~~~~~---~~~~~l~~-~~~--p~-ivviNKiD~~~~~~~~ 121 (168)
T cd01887 49 IPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTI---EAIKLAKA-ANV--PF-IVALNKIDKPNANPER 121 (168)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHH---HHHHHHHH-CCC--CE-EEEEECCCCCCCCHHH
T ss_conf 87189998998167799999998626889999864667545899---99999987-699--78-9999893089879899
Q ss_pred HHHHHHH
Q ss_conf 2689998
Q gi|254780806|r 201 VVSDVRK 207 (265)
Q Consensus 201 ~~~~l~~ 207 (265)
T Consensus 122 v~~~l~~ 128 (168)
T cd01887 122 VKNELSE 128 (168)
T ss_pred HHHHHHH
T ss_conf 9999999