HHsearch alignment for GI: 254780806 and conserved domain: cd01888

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=90.11  E-value=0.27  Score=27.09  Aligned_cols=81  Identities=15%  Similarity=0.139  Sum_probs=44.0

Q ss_pred             CCCCEEEECCCCC--CCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHH-HHH
Q ss_conf             7820331013332--2221011233100111112311378887533577765543202677431002023125310-011
Q gi|254780806|r  124 FSYIFLDCPPSFN--LLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSL-SQQ  200 (265)
Q Consensus       124 yD~IiiD~pp~~~--~~~~~al~aad~viip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~-~~~  200 (265)
T Consensus        83 r~~tiiD~PGH~df~~nmi~Gas~aD~aiLvVdA~eG~~~--~QT~eH~~l~~-~lgv--~~iIV~vNKmDlv~~~~~~~  157 (203)
T cd01888          83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQ--PQTSEHLAALE-IMGL--KHIIIVQNKIDLVKEEQALE  157 (203)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCH--HHHHHHHHHHH-HCCC--CCEEEEEECCCCCCHHHHHH
T ss_conf             4799986898799999999766434766898643667750--77999999999-8499--86367750777788678999


Q ss_pred             HHHHHHHHH
Q ss_conf             268999880
Q gi|254780806|r  201 VVSDVRKNL  209 (265)
Q Consensus       201 ~~~~l~~~~  209 (265)
T Consensus       158 ~~~ei~~~l  166 (203)
T cd01888         158 NYEQIKKFV  166 (203)
T ss_pred             HHHHHHHHH
T ss_conf             999999985