HHsearch alignment for GI: 254780806 and conserved domain: cd01891

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=95.90  E-value=0.0067  Score=36.43  Aligned_cols=80  Identities=13%  Similarity=0.171  Sum_probs=47.8

Q ss_pred             CCCCCEEEECCCCC--CCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHH
Q ss_conf             27820331013332--2221011233100111112311378887533577765543202677431002023125310011
Q gi|254780806|r  123 DFSYIFLDCPPSFN--LLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQ  200 (265)
Q Consensus       123 ~yD~IiiD~pp~~~--~~~~~al~aad~viip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~  200 (265)
T Consensus        64 ~~~~n~IDtPGH~dF~~~~~~~~~~~D~ailVVdA~~Gv~~QT~---~~l~~a~~-~--~~~~i-v~iNK~D~~~a~~~~  136 (194)
T cd01891          64 DTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTR---FVLKKALE-L--GLKPI-VVINKIDRPDARPEE  136 (194)
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHH---HHHHHHHH-C--CCCEE-EEEECCCCCCCCHHH
T ss_conf             98899998998477777898776434467898653789758999---99999987-2--99749-988564589888999


Q ss_pred             HHHHHHHHH
Q ss_conf             268999880
Q gi|254780806|r  201 VVSDVRKNL  209 (265)
Q Consensus       201 ~~~~l~~~~  209 (265)
T Consensus       137 v~~ei~~~~  145 (194)
T cd01891         137 VVDEVFDLF  145 (194)
T ss_pred             HHHHHHHHH
T ss_conf             999999999