HHsearch alignment for GI: 254780806 and conserved domain: cd02038
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=99.95 E-value=1.9e-27 Score=179.72 Aligned_cols=120 Identities=28% Similarity=0.421 Sum_probs=96.2
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCCCCCEE
Q ss_conf 99998088988889999999999998799599998787768011212463334541167630257712102444444200
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTAIPNLS 87 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~~~~l~ 87 (265)
T Consensus 1 vi~v~sgKgGvGkt~~~~nLa~~la~~G~~vll~D~D~g~------------------------------------an~- 43 (139)
T cd02038 1 IIAVTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGL------------------------------------ANL- 43 (139)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC------------------------------------CCC-
T ss_conf 9899649999839999999999999789969999898999------------------------------------657-
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 01488745775000123222210233322476510278203310133322221011233100111112311378887533
Q gi|254780806|r 88 IIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQLL 167 (265)
Q Consensus 88 iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~aad~viip~~p~~~s~~~~~~~~ 167 (265)
T Consensus 44 -----------------------------------~~D~viiD~~aG~~~~~~~~~~~ad~~lvV~tpeptSi~DAYalI 88 (139)
T cd02038 44 -----------------------------------DYDYIIIDTGAGISDNVLDFFLAADEVIVVTTPEPTSITDAYALI 88 (139)
T ss_pred -----------------------------------CCCEEEEECCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHH
T ss_conf -----------------------------------999999948999877899999958957999589706799999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHH
Q ss_conf 57776554320267743100202312531001126899
Q gi|254780806|r 168 ETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDV 205 (265)
Q Consensus 168 ~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l 205 (265)
T Consensus 89 K~l~~---~~~--~~~~~lvvN~v~s~-~ea~~~~~~l 120 (139)
T cd02038 89 KKLAK---QLR--VLNFRVVVNRAESP-KEGKKVFKRL 120 (139)
T ss_pred HHHHH---HCC--CCCEEEEEECCCCH-HHHHHHHHHH
T ss_conf 99999---639--99759999568999-9999999999