HHsearch alignment for GI: 254780806 and conserved domain: cd02038

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=99.95  E-value=1.9e-27  Score=179.72  Aligned_cols=120  Identities=28%  Similarity=0.421  Sum_probs=96.2

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCCCCCEE
Q ss_conf             99998088988889999999999998799599998787768011212463334541167630257712102444444200
Q gi|254780806|r    8 IITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTAIPNLS   87 (265)
Q Consensus         8 vI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~~~~l~   87 (265)
T Consensus         1 vi~v~sgKgGvGkt~~~~nLa~~la~~G~~vll~D~D~g~------------------------------------an~-   43 (139)
T cd02038           1 IIAVTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGL------------------------------------ANL-   43 (139)
T ss_pred             CEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC------------------------------------CCC-
T ss_conf             9899649999839999999999999789969999898999------------------------------------657-


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf             01488745775000123222210233322476510278203310133322221011233100111112311378887533
Q gi|254780806|r   88 IIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQLL  167 (265)
Q Consensus        88 iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~aad~viip~~p~~~s~~~~~~~~  167 (265)
T Consensus        44 -----------------------------------~~D~viiD~~aG~~~~~~~~~~~ad~~lvV~tpeptSi~DAYalI   88 (139)
T cd02038          44 -----------------------------------DYDYIIIDTGAGISDNVLDFFLAADEVIVVTTPEPTSITDAYALI   88 (139)
T ss_pred             -----------------------------------CCCEEEEECCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHH
T ss_conf             -----------------------------------999999948999877899999958957999589706799999999


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHH
Q ss_conf             57776554320267743100202312531001126899
Q gi|254780806|r  168 ETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDV  205 (265)
Q Consensus       168 ~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l  205 (265)
T Consensus        89 K~l~~---~~~--~~~~~lvvN~v~s~-~ea~~~~~~l  120 (139)
T cd02038          89 KKLAK---QLR--VLNFRVVVNRAESP-KEGKKVFKRL  120 (139)
T ss_pred             HHHHH---HCC--CCCEEEEEECCCCH-HHHHHHHHHH
T ss_conf             99999---639--99759999568999-9999999999