HHsearch alignment for GI: 254780806 and conserved domain: cd03111

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=99.90  E-value=5.6e-24  Score=159.46  Aligned_cols=105  Identities=32%  Similarity=0.459  Sum_probs=91.3

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCCCCCE
Q ss_conf             999980889888899999999999987-9959999878776801121246333454116763025771210244444420
Q gi|254780806|r    8 IITIANQKGGVGKTTTAINLSTALAAI-GENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTAIPNL   86 (265)
Q Consensus         8 vI~v~s~KGGvGKTT~a~nlA~~la~~-g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~~~~l   86 (265)
T Consensus         1 vi~~~~~kGGvG~Tt~A~nlA~~la~~~~~~v~lvDldlqf------Gd-------------------------------   43 (106)
T cd03111           1 VIAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQF------GD-------------------------------   43 (106)
T ss_pred             CEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC------CC-------------------------------
T ss_conf             98997289986689999999999998419938999654677------99-------------------------------


Q ss_pred             EECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf             00148874577500012322221023332247651027820331013332222101123310011111231137888753
Q gi|254780806|r   87 SIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQL  166 (265)
Q Consensus        87 ~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~aad~viip~~p~~~s~~~~~~~  166 (265)
T Consensus        44 --------------------------------------d~VVvD~~~~~~~~~~~al~~ad~i~lv~~~~lp~lrn~kr~   85 (106)
T cd03111          44 --------------------------------------DYVVVDLGRSLDEVSLAALDQADRVFLVTQQDLPSIRNAKRL   85 (106)
T ss_pred             --------------------------------------CEEEECCCCCCCHHHHHHHHHCCEEEEEECCCHHHHHHHHHH
T ss_conf             --------------------------------------789991865538899999986797999806774899979999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCE
Q ss_conf             357776554320267743100202
Q gi|254780806|r  167 LETVEEVRRTVNSALDIQGIILTM  190 (265)
Q Consensus       167 ~~~i~~~~~~~~~~~~~~~iv~N~  190 (265)
T Consensus        86 l~~l~~l~~~---~~~ki~lVvNR  106 (106)
T cd03111          86 LELLRVLDYS---LPAKIELVLNR  106 (106)
T ss_pred             HHHHHHCCCC---CCCCEEEEECC
T ss_conf             9999984999---73656998579