HHsearch alignment for GI: 254780806 and conserved domain: cd03111
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=99.90 E-value=5.6e-24 Score=159.46 Aligned_cols=105 Identities=32% Similarity=0.459 Sum_probs=91.3
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCCCCCE
Q ss_conf 999980889888899999999999987-9959999878776801121246333454116763025771210244444420
Q gi|254780806|r 8 IITIANQKGGVGKTTTAINLSTALAAI-GENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTAIPNL 86 (265)
Q Consensus 8 vI~v~s~KGGvGKTT~a~nlA~~la~~-g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~~~~l 86 (265)
T Consensus 1 vi~~~~~kGGvG~Tt~A~nlA~~la~~~~~~v~lvDldlqf------Gd------------------------------- 43 (106)
T cd03111 1 VIAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQF------GD------------------------------- 43 (106)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC------CC-------------------------------
T ss_conf 98997289986689999999999998419938999654677------99-------------------------------
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 00148874577500012322221023332247651027820331013332222101123310011111231137888753
Q gi|254780806|r 87 SIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQL 166 (265)
Q Consensus 87 ~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~aad~viip~~p~~~s~~~~~~~ 166 (265)
T Consensus 44 --------------------------------------d~VVvD~~~~~~~~~~~al~~ad~i~lv~~~~lp~lrn~kr~ 85 (106)
T cd03111 44 --------------------------------------DYVVVDLGRSLDEVSLAALDQADRVFLVTQQDLPSIRNAKRL 85 (106)
T ss_pred --------------------------------------CEEEECCCCCCCHHHHHHHHHCCEEEEEECCCHHHHHHHHHH
T ss_conf --------------------------------------789991865538899999986797999806774899979999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCE
Q ss_conf 357776554320267743100202
Q gi|254780806|r 167 LETVEEVRRTVNSALDIQGIILTM 190 (265)
Q Consensus 167 ~~~i~~~~~~~~~~~~~~~iv~N~ 190 (265)
T Consensus 86 l~~l~~l~~~---~~~ki~lVvNR 106 (106)
T cd03111 86 LELLRVLDYS---LPAKIELVLNR 106 (106)
T ss_pred HHHHHHCCCC---CCCCEEEEECC
T ss_conf 9999984999---73656998579