HHsearch alignment for GI: 254780806 and conserved domain: cd04141
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=90.70 E-value=0.94 Score=23.88 Aligned_cols=112 Identities=12% Similarity=0.153 Sum_probs=57.7
Q ss_pred CCCEEEECCCC--CCCCCCHHHHHHHCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHH
Q ss_conf 82033101333--22221011233100111112-3113788875335777655432026774310020231253100112
Q gi|254780806|r 125 SYIFLDCPPSF--NLLTMNAMAAADSILVPLQC-EFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQV 201 (265)
Q Consensus 125 D~IiiD~pp~~--~~~~~~al~aad~viip~~p-~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~ 201 (265)
T Consensus 51 ~l~iwDtaGqe~~~~l~~~~~r~a~~~ilvydvt~~~Sf~~~~~w~~~i~~~~--~~~~~pii-lvGNK~DL~~--~r-- 123 (172)
T cd04141 51 LLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVR--LTEDIPLV-LVGNKVDLES--QR-- 123 (172)
T ss_pred EEEEEECCCCCCCCCCHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH--CCCCCCEE-EEEECCCHHH--HC--
T ss_conf 99999788851357451556427865688731688889999999999999972--88998689-9850456676--18--
Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHHHHH
Q ss_conf 6899988085201562678688987773798579997999--89999999999999999
Q gi|254780806|r 202 VSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLKC--AGSQAYLKLASELIQQE 258 (265)
Q Consensus 202 ~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~~~~p~s--~~a~~~~~la~el~~~~ 258 (265)
T Consensus 124 ---------------~Vs~~e~~~~a~~~~~~f~EtSAk~~~nV~e~F~~l~~~i~~k~ 167 (172)
T cd04141 124 ---------------QVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLVREIRRKE 167 (172)
T ss_pred ---------------CCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC
T ss_conf ---------------88999999999985997999747888288999999999998635