HHsearch alignment for GI: 254780806 and conserved domain: cd04144
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=92.17 E-value=0.54 Score=25.29 Aligned_cols=111 Identities=16% Similarity=0.160 Sum_probs=54.9
Q ss_pred EEEECCCCC--CCCCCHHHHHHHCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHH
Q ss_conf 331013332--2221011233100111112-3113788875335777655432026774310020231253100112689
Q gi|254780806|r 128 FLDCPPSFN--LLTMNAMAAADSILVPLQC-EFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSD 204 (265)
Q Consensus 128 iiD~pp~~~--~~~~~al~aad~viip~~p-~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~ 204 (265)
T Consensus 51 iwDtaG~e~~~~l~~~~~r~a~~~ilVydvtd~~SF~~l~~w~~~i~~~~~~~~~~~pi-iLVGNK~Dl~~--~r~---- 123 (190)
T cd04144 51 VLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPI-MIVGNKCDKVY--ERE---- 123 (190)
T ss_pred EEECCCCCCHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEE-EECCCCCCHHH--CCC----
T ss_conf 99899973116788998236765899972797789999999999999985337999528-95145535033--057----
Q ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHHHHH
Q ss_conf 9988085201562678688987773798579997999--89999999999999999
Q gi|254780806|r 205 VRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLKC--AGSQAYLKLASELIQQE 258 (265)
Q Consensus 205 l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~~~~p~s--~~a~~~~~la~el~~~~ 258 (265)
T Consensus 124 -------------V~~~e~~~~a~~~~~~~~E~SAk~~~nV~e~F~~l~~~i~~~~ 166 (190)
T cd04144 124 -------------VSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQR 166 (190)
T ss_pred -------------CCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf -------------8999999999980998999735888097999999999999877