HHsearch alignment for GI: 254780806 and conserved domain: cd04144

>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=92.17  E-value=0.54  Score=25.29  Aligned_cols=111  Identities=16%  Similarity=0.160  Sum_probs=54.9

Q ss_pred             EEEECCCCC--CCCCCHHHHHHHCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHH
Q ss_conf             331013332--2221011233100111112-3113788875335777655432026774310020231253100112689
Q gi|254780806|r  128 FLDCPPSFN--LLTMNAMAAADSILVPLQC-EFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSD  204 (265)
Q Consensus       128 iiD~pp~~~--~~~~~al~aad~viip~~p-~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~  204 (265)
T Consensus        51 iwDtaG~e~~~~l~~~~~r~a~~~ilVydvtd~~SF~~l~~w~~~i~~~~~~~~~~~pi-iLVGNK~Dl~~--~r~----  123 (190)
T cd04144          51 VLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPI-MIVGNKCDKVY--ERE----  123 (190)
T ss_pred             EEECCCCCCHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEE-EECCCCCCHHH--CCC----
T ss_conf             99899973116788998236765899972797789999999999999985337999528-95145535033--057----


Q ss_pred             HHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHHHHH
Q ss_conf             9988085201562678688987773798579997999--89999999999999999
Q gi|254780806|r  205 VRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLKC--AGSQAYLKLASELIQQE  258 (265)
Q Consensus       205 l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~~~~p~s--~~a~~~~~la~el~~~~  258 (265)
T Consensus       124 -------------V~~~e~~~~a~~~~~~~~E~SAk~~~nV~e~F~~l~~~i~~~~  166 (190)
T cd04144         124 -------------VSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQR  166 (190)
T ss_pred             -------------CCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             -------------8999999999980998999735888097999999999999877