HHsearch alignment for GI: 254780806 and conserved domain: cd04167
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=91.27 E-value=0.095 Score=29.70 Aligned_cols=63 Identities=14% Similarity=0.261 Sum_probs=39.1
Q ss_pred CCCCEEEECCCCC--CCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEC
Q ss_conf 7820331013332--222101123310011111231137888753357776554320267743100202312
Q gi|254780806|r 124 FSYIFLDCPPSFN--LLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDS 193 (265)
Q Consensus 124 yD~IiiD~pp~~~--~~~~~al~aad~viip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~ 193 (265)
T Consensus 71 ~~inlIDTPGH~dF~~ev~~al~~~DgailVVDa~eGv~~qT~~~---l~~a---~~~~l~~i-lviNKiDR 135 (213)
T cd04167 71 YLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERL---IRHA---ILEGLPIV-LVINKIDR 135 (213)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHH---HHHH---HHCCCCEE-EEEECCCC
T ss_conf 578778898724179999988863776799998788875779999---9999---98699989-99988234