RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780806|ref|YP_003065219.1| chromosome partitioning protein A [Candidatus Liberibacter asiaticus str. psy62] (265 letters) >gnl|CDD|163271 TIGR03453, partition_RepA, plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error. Length = 387 Score = 112 bits (283), Expect = 8e-26 Identities = 68/244 (27%), Positives = 119/244 (48%), Gaps = 30/244 (12%) Query: 8 IITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIE----------L 57 +I + N KGG GKTTTA +L+ LA G VL IDLDPQ + S G + L Sbjct: 106 VIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDPQASLSALFGYQPEFDVGENETL 165 Query: 58 YDR-KYSSYDLLIEEKNINQILIQTAIPNLSIIPSTMDLLGIE------MILGGEKDRLF 110 Y +Y E + +++I+ +T P L ++P ++L+ E + G D +F Sbjct: 166 YGAIRYDD-----ERRPLSEIIRKTYFPGLDLVPGNLELMEFEHETPRALSRGQGGDTIF 220 Query: 111 --RLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQLLE 168 R+ +AL+ ++ D+ + +DCPP LT++A+ AA +L+ + + + +SQ L Sbjct: 221 FARVGEALA-EVEDDYDVVVIDCPPQLGFLTLSALCAATGVLITVHPQMLDVMSMSQFLL 279 Query: 169 TVEEVRRTVNSA-----LDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVR 223 ++ V A D ++T ++ + Q+V+ +R G V + ++ Sbjct: 280 MTGDLLGVVREAGGNLSYDFMRYLVTRYEPNDGPQAQMVAFLRSLFGDHVLTNPMLKSTA 339 Query: 224 ISEA 227 IS+A Sbjct: 340 ISDA 343 >gnl|CDD|131024 TIGR01969, minD_arch, cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown. Length = 251 Score = 107 bits (269), Expect = 3e-24 Identities = 74/260 (28%), Positives = 128/260 (49%), Gaps = 24/260 (9%) Query: 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD-PQGNASTGLGIELYDRKYSSY 65 RIITIA+ KGG GKTT NL ALA +G+ VL +D D N LG+E D+ + + Sbjct: 1 RIITIASGKGGTGKTTITANLGVALAKLGKKVLALDADITMANLELILGME--DKPVTLH 58 Query: 66 DLLIEEKNINQILIQTAIPN-LSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDF 124 D+L E +I + + P + +IP+ + L G+ K +L+ L ++ D Sbjct: 59 DVLAGEADIKDAIYEG--PFGVKVIPAGVSLEGL------RKADPDKLEDVLK-EIIDDT 109 Query: 125 SYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQ 184 ++ +D P + A+AAAD +L+ + E + ++ L+T + I Sbjct: 110 DFLLIDAPAGLERDAVTALAAADELLLVVNPEISS---ITDALKTKIVAEK---LGTAIL 163 Query: 185 GIILTMFDS-RNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLKCAG 243 G++L + L ++ + + L V V+P + + A ++G+P +IY+ Sbjct: 164 GVVLNRVTRDKTELGREEIETI---LEVPVL-GVVPEDPEVRRAAAFGEPVVIYNPNSPA 219 Query: 244 SQAYLKLASELIQQERHRKE 263 +QA+++LA+EL E KE Sbjct: 220 AQAFMELAAELAGIEYEPKE 239 >gnl|CDD|139929 PRK13869, PRK13869, plasmid-partitioning protein RepA; Provisional. Length = 405 Score = 84.3 bits (208), Expect = 3e-17 Identities = 59/240 (24%), Positives = 115/240 (47%), Gaps = 20/240 (8%) Query: 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLG------IELYDR 60 ++I + N KGG GKTTT+ +L+ LA G VL +DLDPQ + S LG + + Sbjct: 122 QVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQASLSALLGVLPETDVGANET 181 Query: 61 KYSSYDLLIEEKNINQILIQTAIPNLSIIPSTMDLLGIE------MILGGEKDRLF--RL 112 Y++ + + ++ T L ++P ++L+ E + G +D LF R+ Sbjct: 182 LYAAIRYDDTRRPLRDVIRPTYFDGLHLVPGNLELMEFEHTTPKALSDKGTRDGLFFTRV 241 Query: 113 DKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEE 172 +A ++ D+ + +DCPP LT++ + AA S+++ + + + +SQ L + Sbjct: 242 AQAFD-EVADDYDVVVIDCPPQLGFLTLSGLCAATSMVITVHPQMLDIASMSQFLLMTRD 300 Query: 173 VRRTVNSA-----LDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEA 227 + V A D +LT ++ +++ +V + +R V + ++ +S+A Sbjct: 301 LLGVVKEAGGNLQYDFIRYLLTRYEPQDAPQTKVAALLRNMFEDHVLTNPMVKSAAVSDA 360 >gnl|CDD|131023 TIGR01968, minD_bact, septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model. Length = 261 Score = 77.0 bits (190), Expect = 4e-15 Identities = 77/261 (29%), Positives = 126/261 (48%), Gaps = 31/261 (11%) Query: 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD-PQGNASTGLGIELYDR-KYSS 64 R+I I + KGGVGKTTT NL TALA +G+ V+LID D N LG+E +R Y+ Sbjct: 2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADIGLRNLDLLLGLE--NRIVYTL 59 Query: 65 YDLLIEEKNINQILIQTA-IPNLSIIPSTMDLLGIEMILGGEKDRLFRLD-KALSVQLTS 122 D++ E + Q LI+ + NL ++P++ +KD + K L +L Sbjct: 60 VDVVEGECRLQQALIKDKRLKNLYLLPASQT---------RDKDAVTPEQMKKLVNELKE 110 Query: 123 DFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQLL-----ETVEEVRRTV 177 +F Y+ +DCP NA+A AD +V E A+ +++ + +E++ V Sbjct: 111 EFDYVIIDCPAGIESGFRNAVAPADEAIVVTTPEVSAVRDADRVIGLLEAKGIEKIHLIV 170 Query: 178 NSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIY 237 N + M + LS V DV + L + VIP + I + + G+P ++ Sbjct: 171 NR------LRPEMVKKGDMLS---VDDVLEILSIPLIG-VIPEDEAIIVSTNKGEPVVLN 220 Query: 238 DLKCAGSQAYLKLASELIQQE 258 D K +A+ +A ++ +E Sbjct: 221 D-KSRAGKAFENIARRILGEE 240 >gnl|CDD|134018 PHA02518, PHA02518, ParA-like protein; Provisional. Length = 211 Score = 76.8 bits (189), Expect = 5e-15 Identities = 50/172 (29%), Positives = 76/172 (44%), Gaps = 46/172 (26%) Query: 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYD 66 +II + NQKGG GKTT A NL++ L A G VLL+DLDPQG+++ Sbjct: 1 KIIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTD--------------- 45 Query: 67 LLIEEKNINQILIQTAIPNLSIIPS-TMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFS 125 E + + L IP + + S DL ++ S + Sbjct: 46 -WAEAREEGEPL----IPVVRMGKSIRADLP----------------------KVASGYD 78 Query: 126 YIFLDCPPSFNLLTMNAMAAADSILVPLQCEFF---ALEGLSQLLETVEEVR 174 Y+ +D P + L A+ AD +L+P+Q F A L +L++ +EV Sbjct: 79 YVVVDGAPQDSELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVT 130 >gnl|CDD|184261 PRK13705, PRK13705, plasmid-partitioning protein SopA; Provisional. Length = 388 Score = 75.8 bits (186), Expect = 1e-14 Identities = 69/233 (29%), Positives = 110/233 (47%), Gaps = 30/233 (12%) Query: 8 IITIANQKGGVGKTTTAINLSTALAAIGENVLLID-LDPQGNASTGLGIELYDRKYSSYD 66 +I +A KGGV KT+ +++L+ LA G VLL++ DPQG AS G + D + D Sbjct: 108 VIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTASMYHGW-VPDLHIHAED 166 Query: 67 LLI-----EEKNINQILIQTAIPNLSIIPSTMDLLGIEMILGGEKDR---------LFRL 112 L+ E+ + + T P L IIPS + L IE L G+ D + RL Sbjct: 167 TLLPFYLGEKDDATYAIKPTCWPGLDIIPSCLALHRIETELMGKFDEGKLPTDPHLMLRL 226 Query: 113 DKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEE 172 A+ + D+ I +D P+ + T+N + AAD ++VP E F Q + + + Sbjct: 227 --AIE-TVAHDYDVIVIDSAPNLGIGTINVVCAADVLIVPTPAELFDYTSALQFFDMLRD 283 Query: 173 VRRTVNSALDIQG------IILTMFDSRN-SLSQQVVSDVRKNLGGKVYNTVI 218 + + V D++G I+LT + + N S S + +R G V V+ Sbjct: 284 LLKNV----DLKGFEPDVRILLTKYSNSNGSQSPWMEEQIRDAWGSMVLKNVV 332 >gnl|CDD|117696 pfam09140, MipZ, ATPase MipZ. MipZ is an ATPase that forms a complex with the chromosome partitioning protein ParB near the chromosomal origin of replication. It is responsible for the temporal and spatial regulation of FtsZ ring formation. Length = 261 Score = 68.5 bits (168), Expect = 1e-12 Identities = 60/233 (25%), Positives = 97/233 (41%), Gaps = 43/233 (18%) Query: 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYD 66 +I + N+KGG GK+TTA++++ AL +G V IDLD + T R + Sbjct: 1 HVIVVGNEKGGSGKSTTAVHVAVALLYLGARVATIDLDLRQRTLT--------RYIENRA 52 Query: 67 LLIEEKNINQILIQTAIPNLSIIPSTMDL-LGIEMILGGEKDRLFRLDKALSVQLTSDFS 125 E + +P +P + L + + GE RL++A+ L D Sbjct: 53 ATAERTGL-------DLP----VPKHLCLPDDVSEVFDGESADDARLEEAV-ADLEQDAD 100 Query: 126 YIFLDCPPSFNLLTMNAMAAADSILVPLQCEF-------------FALEGLSQLLETVEE 172 +I +D P S + L+ A + AD+++ PL F F + S E V E Sbjct: 101 FIVIDTPGSDSPLSRLAHSRADTLVTPLNDSFVDFDLLGQVDPETFKVTRPSFYAEMVWE 160 Query: 173 VRRTVNSA--LDIQGII----LTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIP 219 R+ A I I+ L+ ++RN ++ V D L +V V P Sbjct: 161 ARKKRAQADRAPIDWIVLRNRLSTLEARN---KRRVEDALNELSKRVGFRVAP 210 >gnl|CDD|107201 PHA02519, PHA02519, plasmid partition protein SopA; Reviewed. Length = 387 Score = 66.2 bits (161), Expect = 9e-12 Identities = 65/237 (27%), Positives = 105/237 (44%), Gaps = 26/237 (10%) Query: 2 EEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLID-LDPQGNASTGLGIELYDR 60 ++K ++ + + KGGV KT++A++ + LA G VLLI+ DPQG AS G + D Sbjct: 102 DDKNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEGNDPQGTASMYHGY-VPDL 160 Query: 61 KYSSYDLLI-----EEKNINQILIQTAIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKA 115 + D L+ E N + T P L IIPS + L IE L D +L Sbjct: 161 HIHADDTLLPFYLGERDNAEYAIKPTCWPGLDIIPSCLALHRIETDLMQYHDA-GKLPHP 219 Query: 116 LSVQLTS-------DFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQLLE 168 + L + ++ I +D P+ T+N + AAD I+V E F + Q Sbjct: 220 PHLMLRAAIESVWDNYDIIVIDSAPNLGTGTINVVCAADVIVVATPAELFDYVSVLQFFT 279 Query: 169 TVEEVRRTVNSALDIQG------IILTMFDSRN-SLSQQVVSDVRKNLGGKVYNTVI 218 + ++ TV D+ G ++LT + + S+ + +R G V V+ Sbjct: 280 MLLDLLATV----DLGGFEPVVRLLLTKYSLTVGNQSRWMEEQIRNTWGSMVLRQVV 332 >gnl|CDD|182756 PRK10818, PRK10818, cell division inhibitor MinD; Provisional. Length = 270 Score = 58.4 bits (141), Expect = 2e-09 Identities = 72/268 (26%), Positives = 125/268 (46%), Gaps = 32/268 (11%) Query: 6 SRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD-PQGNASTGLGIELYDRK--Y 62 +RII + + KGGVGKTT++ ++T LA G+ ++ID D N +G E R+ Y Sbjct: 2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCE---RRVVY 58 Query: 63 SSYDLLIEEKNINQILIQTA-IPNLSIIPSTMDLLGIEMILGGEKDRLFR--LDKALSVQ 119 +++ + +NQ LI+ NL I+P++ +KD L R + K L Sbjct: 59 DFVNVIQGDATLNQALIKDKRTENLYILPASQTR---------DKDALTREGVAKVLDDL 109 Query: 120 LTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQLLETV-EEVRRTVN 178 DF +I D P + A+ AD ++ E ++ ++L + + RR N Sbjct: 110 KAMDFEFIVCDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAEN 169 Query: 179 SALDI-QGIILTMFD----SRNSL--SQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYG 231 I + ++LT ++ SR + + V+ +R L G VIP + + A + G Sbjct: 170 GEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKLVG-----VIPEDQSVLRASNQG 224 Query: 232 KPAIIYDLKCAGSQAYLKLASELIQQER 259 +P +I D++ +AY L+ +ER Sbjct: 225 EP-VILDIEADAGKAYADTVDRLLGEER 251 >gnl|CDD|163238 TIGR03371, cellulose_yhjQ, cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined. Length = 246 Score = 52.0 bits (125), Expect = 2e-07 Identities = 24/40 (60%), Positives = 28/40 (70%) Query: 8 IITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQG 47 +I I KGGVGKTT NL++AL +GE VL IDLDPQ Sbjct: 3 VIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQN 42 Score = 36.2 bits (84), Expect = 0.009 Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 4/129 (3%) Query: 127 IFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGI 186 + +D P + +T A+AAAD +LV + + L Q + Sbjct: 118 VLIDVPRGPSPITRQALAAADLVLVVVNADAACYATLHQQALALFAGSGPRIGP----HF 173 Query: 187 ILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLKCAGSQA 246 ++ FD LS+ V + +R+ LG ++ VI R+ +SEA + G P + Y + Sbjct: 174 LINQFDPARQLSRDVRAVLRQTLGSRLLPFVIHRDEAVSEALARGTPVLNYAPHSQAAHD 233 Query: 247 YLKLASELI 255 LA L+ Sbjct: 234 IRTLAGWLL 242 >gnl|CDD|183270 PRK11670, PRK11670, antiporter inner membrane protein; Provisional. Length = 369 Score = 47.3 bits (113), Expect = 4e-06 Identities = 20/37 (54%), Positives = 29/37 (78%) Query: 8 IITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD 44 II +++ KGGVGK++TA+NL+ ALAA G V ++D D Sbjct: 109 IIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDAD 145 >gnl|CDD|130080 TIGR01007, eps_fam, capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes. Length = 204 Score = 45.1 bits (107), Expect = 2e-05 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 3/86 (3%) Query: 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSY- 65 +++ I + K G GK+TT+ N++ A A G LLID D + S G K + Sbjct: 18 KVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRN--SVMSGTFKSQNKITGLT 75 Query: 66 DLLIEEKNINQILIQTAIPNLSIIPS 91 + L +++ + T I NL +I S Sbjct: 76 NFLSGTTDLSDAICDTNIENLFVITS 101 >gnl|CDD|183881 PRK13185, chlL, protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional. Length = 270 Score = 45.0 bits (107), Expect = 2e-05 Identities = 18/32 (56%), Positives = 24/32 (75%) Query: 15 KGGVGKTTTAINLSTALAAIGENVLLIDLDPQ 46 KGG+GK+TT+ NLS A A +G+ VL I DP+ Sbjct: 10 KGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPK 41 >gnl|CDD|162661 TIGR02016, BchX, chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein. Length = 296 Score = 44.1 bits (104), Expect = 4e-05 Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 5/98 (5%) Query: 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGL--GIEL--YDRKY 62 RII I KGG GK+ T NLS +A +G+ VL + DP+ ++++ L GI L Sbjct: 1 RIIAIYG-KGGSGKSFTTTNLSHMMAEMGKRVLQLGCDPKHDSTSLLFGGISLPTIIEVA 59 Query: 63 SSYDLLIEEKNINQILIQTAIPNLSIIPSTMDLLGIEM 100 + L EE + + +T I N S M+L G E+ Sbjct: 60 TEKKLAGEEVKVGDVCFKTTIMNGSGGVYGMELGGPEV 97 >gnl|CDD|130078 TIGR01005, eps_transp_fam, exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export. Length = 754 Score = 43.5 bits (102), Expect = 6e-05 Identities = 35/198 (17%), Positives = 71/198 (35%), Gaps = 25/198 (12%) Query: 1 MEEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDR 60 + ++ + +GK+ N + +A+ G+ LLID D + A + + + Sbjct: 541 KSVAEPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGRKAALSQILVA--RE 598 Query: 61 KYSSYDLLIEEKNINQILIQTAIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQL 120 DLL +++ L + +L ++ S + GI +L +F +L + Sbjct: 599 VSGLLDLLAGLRSLLLDLTASGAASLPMLDSGLFPHGITELLASP--AMF----SLVIHA 652 Query: 121 TSDFSYIFLDCPPSFNLLTMNAMAAAD--SILVPLQCEFFALEGLSQLLETVEEVRRTVN 178 + +D + M AA +I++ L + VE R Sbjct: 653 RLYSDCVVVDVGT---ADPVRDMRAAARLAIIMLLVTAY----DRV----VVECGRADAQ 701 Query: 179 S----ALDIQGIILTMFD 192 ++ G+ L M D Sbjct: 702 GISRLNGEVTGVFLNMLD 719 >gnl|CDD|130348 TIGR01281, DPOR_bchL, light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit. Length = 268 Score = 42.9 bits (101), Expect = 8e-05 Identities = 18/36 (50%), Positives = 27/36 (75%) Query: 15 KGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNAS 50 KGG+GK+TT+ NLS A A +G+ VL I DP+ +++ Sbjct: 8 KGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPKHDST 43 >gnl|CDD|106194 PRK13232, nifH, nitrogenase reductase; Reviewed. Length = 273 Score = 42.3 bits (99), Expect = 1e-04 Identities = 17/39 (43%), Positives = 28/39 (71%) Query: 15 KGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGL 53 KGG+GK+TT NL+ AL+ +G +LL+ DP+ +++ L Sbjct: 9 KGGIGKSTTTQNLTAALSTMGNKILLVGCDPKADSTRML 47 >gnl|CDD|132063 TIGR03018, pepcterm_TyrKin, exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins. Length = 207 Score = 41.5 bits (98), Expect = 2e-04 Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 8/80 (10%) Query: 16 GGVGKTTTAINLSTALAA-IGENVLLIDLD---PQGNASTGLGIELYDRKYSSYDLLIEE 71 G GK+ TAINL+ +LA + VLLID D P LG+E + S LL Sbjct: 45 PGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPS--LHRTLGLE-AEPGLSDC-LLDPV 100 Query: 72 KNINQILIQTAIPNLSIIPS 91 ++ +L+ T I LS++P+ Sbjct: 101 LDLADVLVPTNIGRLSLLPA 120 >gnl|CDD|183903 PRK13230, PRK13230, nitrogenase reductase-like protein; Reviewed. Length = 279 Score = 41.3 bits (97), Expect = 3e-04 Identities = 17/40 (42%), Positives = 27/40 (67%) Query: 15 KGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLG 54 KGG+GK+TT N++ ALA G+ VL++ DP+ + + L Sbjct: 9 KGGIGKSTTVCNIAAALAESGKKVLVVGCDPKADCTRNLV 48 Score = 30.5 bits (69), Expect = 0.43 Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 7/117 (5%) Query: 143 MAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQ-QV 201 AD + + C+ A+ + + + ++ + SAL GII ++ R+ + + Sbjct: 139 KGLADDVYIVTTCDPMAIYAANNICKGIKRFAKRGKSALG--GII---YNGRSVIDAPDI 193 Query: 202 VSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLKCAGSQAYLKLASELIQQE 258 V + K +G V IP + I+EA YGK I Y S + +LA + + Sbjct: 194 VEEFAKKIGTNVIGK-IPMSNIITEAEIYGKTVIEYAPDSEISNIFRELAEAIYENN 249 >gnl|CDD|162286 TIGR01287, nifH, nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase. Length = 275 Score = 39.7 bits (93), Expect = 8e-04 Identities = 15/32 (46%), Positives = 25/32 (78%) Query: 15 KGGVGKTTTAINLSTALAAIGENVLLIDLDPQ 46 KGG+GK+TT N++ ALA +G+ V+++ DP+ Sbjct: 8 KGGIGKSTTTQNIAAALAEMGKKVMIVGCDPK 39 Score = 30.8 bits (70), Expect = 0.35 Identities = 24/114 (21%), Positives = 51/114 (44%), Gaps = 7/114 (6%) Query: 146 ADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNS-LSQQVVSD 204 A I + E AL + + + + + ++ L G+I +SRN ++++ + Sbjct: 141 AQEIYIVTSGEMMALYAANNICKGILKYAKSGGVRLG--GLI---CNSRNVDDEKELIDE 195 Query: 205 VRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLKCAGSQAYLKLASELIQQE 258 K LG ++ + V PR+ + +A I YD + + Y +LA ++ + Sbjct: 196 FAKKLGTQLIHFV-PRSNIVQKAEIRKMTVIEYDPESEQANEYRELAKKIYENT 248 >gnl|CDD|183173 PRK11519, PRK11519, tyrosine kinase; Provisional. Length = 719 Score = 38.2 bits (89), Expect = 0.002 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 4/91 (4%) Query: 1 MEEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD-PQGNASTGLGIELYD 59 M + ++ ++ + +GKT NL+ ++ + VLLID D +G LG + Sbjct: 521 MMQAQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVN 580 Query: 60 RKYSSYDLLIEEKNINQILIQTAIPNLSIIP 90 D+LI + +I T+I N +IP Sbjct: 581 ---GLSDILIGQGDITTAAKPTSIANFDLIP 608 >gnl|CDD|148269 pfam06564, YhjQ, YhjQ protein. This family consists of several bacterial YhjQ proteins. The function of this family is unknown. However, the family does contain a P-loop sequence motif suggesting a nucleotide binding function. Length = 244 Score = 37.8 bits (88), Expect = 0.003 Identities = 15/31 (48%), Positives = 20/31 (64%) Query: 15 KGGVGKTTTAINLSTALAAIGENVLLIDLDP 45 +GGVG T+ L AL +GE+VL+ID P Sbjct: 10 RGGVGTTSLTAALGWALQQLGESVLVIDASP 40 >gnl|CDD|183908 PRK13236, PRK13236, nitrogenase reductase; Reviewed. Length = 296 Score = 37.7 bits (87), Expect = 0.003 Identities = 17/50 (34%), Positives = 32/50 (64%), Gaps = 1/50 (2%) Query: 1 MEEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNAS 50 M ++ R I KGG+GK+TT+ N A+A +G+ +L++ DP+ +++ Sbjct: 1 MTDENIRQIAFYG-KGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKADST 49 >gnl|CDD|182204 PRK10037, PRK10037, cell division protein; Provisional. Length = 250 Score = 37.5 bits (87), Expect = 0.004 Identities = 35/152 (23%), Positives = 61/152 (40%), Gaps = 17/152 (11%) Query: 8 IITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDL 67 I+ + +GGVG T+ L+ +L +GENVL+ID P ++ R+ + L Sbjct: 3 ILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPDNLLRLSFNVDFTHRQGWARAL 62 Query: 68 LIEEKNINQILIQTAIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALS--------VQ 119 L + + L T S +DLL + E++ L ++ Sbjct: 63 LDGQDWRDAGLRYT---------SQLDLLPFGQLSIEEQENPQHWQTRLGDICSALQQLK 113 Query: 120 LTSDFSYIFLDCPPSFNLLTMNAMAAADSILV 151 + + +I LD P + LT ++ D L Sbjct: 114 ASGRYQWILLDLPRGASPLTRQLLSLCDHSLA 145 >gnl|CDD|183906 PRK13234, nifH, nitrogenase reductase; Reviewed. Length = 295 Score = 37.1 bits (86), Expect = 0.004 Identities = 14/36 (38%), Positives = 26/36 (72%) Query: 15 KGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNAS 50 KGG+GK+TT+ N AL +G+ +L++ DP+ +++ Sbjct: 12 KGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADST 47 >gnl|CDD|183907 PRK13235, nifH, nitrogenase reductase; Reviewed. Length = 274 Score = 35.9 bits (83), Expect = 0.012 Identities = 14/36 (38%), Positives = 25/36 (69%) Query: 15 KGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNAS 50 KGG+GK+TT N LA +G+ V+++ DP+ +++ Sbjct: 9 KGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKADST 44 >gnl|CDD|163527 TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria. Length = 322 Score = 35.4 bits (82), Expect = 0.014 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 5/52 (9%) Query: 6 SRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIEL 57 ++ + +GG G +T A L+ A A G LL+D DP G G++L Sbjct: 93 GVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLVDADPWGG-----GLDL 139 >gnl|CDD|139909 PRK13849, PRK13849, putative crown gall tumor protein VirC1; Provisional. Length = 231 Score = 34.8 bits (80), Expect = 0.024 Identities = 16/38 (42%), Positives = 24/38 (63%) Query: 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD 44 +++T + KGG GKTT + L ALA+ G+ V L + D Sbjct: 2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEAD 39 >gnl|CDD|148565 pfam07015, VirC1, VirC1 protein. This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon which enhances T-DNA processing probably does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA. Length = 231 Score = 34.5 bits (79), Expect = 0.028 Identities = 17/38 (44%), Positives = 25/38 (65%) Query: 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD 44 ++IT + KGG GKTT + L +ALA+ G+ V L + D Sbjct: 2 QLITFCSFKGGAGKTTALMGLCSALASDGKRVALFEAD 39 >gnl|CDD|183904 PRK13231, PRK13231, nitrogenase reductase-like protein; Reviewed. Length = 264 Score = 32.1 bits (73), Expect = 0.14 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Query: 15 KGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGL 53 KGG+GK+TT N++ A + VL+I DP+ + + L Sbjct: 10 KGGIGKSTTVSNMAAAYSN-DHRVLVIGCDPKADTTRTL 47 >gnl|CDD|184096 PRK13505, PRK13505, formate--tetrahydrofolate ligase; Provisional. Length = 557 Score = 31.7 bits (73), Expect = 0.22 Identities = 9/24 (37%), Positives = 14/24 (58%) Query: 17 GVGKTTTAINLSTALAAIGENVLL 40 G GK+T + L AL IG+ ++ Sbjct: 69 GEGKSTVTVGLGDALNKIGKKTVI 92 >gnl|CDD|182106 PRK09841, PRK09841, cryptic autophosphorylating protein tyrosine kinase Etk; Provisional. Length = 726 Score = 31.0 bits (70), Expect = 0.32 Identities = 14/44 (31%), Positives = 21/44 (47%) Query: 1 MEEKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLD 44 M E ++ I+ I GKT + L+ +A + VL ID D Sbjct: 526 MMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDAD 569 >gnl|CDD|183905 PRK13233, nifH, nitrogenase reductase; Reviewed. Length = 275 Score = 30.9 bits (70), Expect = 0.32 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%) Query: 15 KGGVGKTTTAINLSTALAAI-GENVLLIDLDPQGNAS 50 KGG+GK+TT N + A+A + V + DP+ +++ Sbjct: 10 KGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKADST 46 >gnl|CDD|179865 PRK04570, PRK04570, cell division protein ZipA; Provisional. Length = 243 Score = 29.9 bits (67), Expect = 0.68 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 9/79 (11%) Query: 132 PPSFNLLTMNAM-AAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTM 190 P SF++ + M A + + L AL+ ++L TV+ + A + G++L Sbjct: 155 PGSFDMANIREMQTPAIAFFLTLPAPMTALDAWEKMLPTVQRM------AELLDGVVLD- 207 Query: 191 FDSRNSLSQQVVSDVRKNL 209 DSRN+L +Q ++ +R L Sbjct: 208 -DSRNALGRQRIAHIRDEL 225 >gnl|CDD|179157 PRK00889, PRK00889, adenylylsulfate kinase; Provisional. Length = 175 Score = 29.2 bits (66), Expect = 1.1 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Query: 17 GVGKTTTAINLSTALAAIGENVLLIDLDP-QGNASTGLGIELYDR 60 G GKTT A L+ L G V ++D D + N S GLG DR Sbjct: 14 GAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSKGLGFSKEDR 58 >gnl|CDD|179349 PRK01906, PRK01906, tetraacyldisaccharide 4'-kinase; Provisional. Length = 338 Score = 29.0 bits (65), Expect = 1.3 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 8/42 (19%) Query: 16 GGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIEL 57 GG GKT T I L AL A G P G S G G ++ Sbjct: 67 GGTGKTPTVIALVDALRAAG-------FTP-GVVSRGYGAKI 100 >gnl|CDD|184370 PRK13886, PRK13886, conjugal transfer protein TraL; Provisional. Length = 241 Score = 28.9 bits (65), Expect = 1.5 Identities = 14/31 (45%), Positives = 19/31 (61%) Query: 15 KGGVGKTTTAINLSTALAAIGENVLLIDLDP 45 KGGVGK+ A ++ A+ G+ L ID DP Sbjct: 11 KGGVGKSFIAATIAQYKASKGQKPLCIDTDP 41 >gnl|CDD|184097 PRK13506, PRK13506, formate--tetrahydrofolate ligase; Provisional. Length = 578 Score = 28.8 bits (65), Expect = 1.5 Identities = 11/22 (50%), Positives = 14/22 (63%) Query: 17 GVGKTTTAINLSTALAAIGENV 38 G GKT T I L+ L A+G+ V Sbjct: 68 GEGKTVTTIGLTQGLNALGQKV 89 >gnl|CDD|162777 TIGR02237, recomb_radB, DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236). Length = 209 Score = 28.2 bits (63), Expect = 2.0 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 7/50 (14%) Query: 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIE 56 IT G GKT + L+ A G+ V+ ID + GL E Sbjct: 12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID-------TEGLSPE 54 >gnl|CDD|163455 TIGR03743, SXT_TraD, conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains. Length = 634 Score = 28.4 bits (64), Expect = 2.2 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%) Query: 17 GVGKTTTAINLSTALAAIGENVLLIDLDPQGNA 49 GVGKT A L T G+ V I +DP+G+A Sbjct: 186 GVGKTRLAELLITQDIRRGDVV--IVIDPKGDA 216 >gnl|CDD|182150 PRK09928, PRK09928, choline transport protein BetT; Provisional. Length = 679 Score = 28.1 bits (63), Expect = 2.4 Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 5/60 (8%) Query: 133 PSFNLLTMNAMAAADSILVPLQCEFFAL-EGLSQLLETVEEVRRTVNSALDIQGIILTMF 191 P F+LL+ AM A I + L FF++ E ++Q ++ E +T+ +A Q ++ T+F Sbjct: 91 PEFSLLSWAAMLFAAGIGIDLM--FFSVAEPVTQYMQPPEGAGQTIEAAR--QAMVWTLF 146 >gnl|CDD|162762 TIGR02208, lipid_A_msbB, lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase. This family consists of MsbB in E. coli and closely related proteins in other species. MsbB is homologous to HtrB (TIGR02207) and acts immediately after it in the biosynthesis of KDO-2 lipid A (also called Re LPS and Re endotoxin). These two enzymes act after creation of KDO-2 lipid IV-A by addition of the KDO sugars. Length = 305 Score = 28.2 bits (63), Expect = 2.5 Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 11/70 (15%) Query: 156 EFFALEGLSQLLETVEEVRRTVNS--ALDIQGIIL--------TMFD-SRNSLSQQVVSD 204 LE + + V V A+D G+ L TMF+ +N L + + Sbjct: 107 NLMGLEHIEAAQAAGKPVIFLVPHGWAIDYAGLRLASQGLPMVTMFNNHKNPLFDWLWNR 166 Query: 205 VRKNLGGKVY 214 VR GG VY Sbjct: 167 VRSRFGGHVY 176 >gnl|CDD|181591 PRK08945, PRK08945, putative oxoacyl-(acyl carrier protein) reductase; Provisional. Length = 247 Score = 27.9 bits (63), Expect = 2.7 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%) Query: 226 EAPSYGKPAII-YDLKCAGSQAYLKLASELIQQ 257 EA +PAII DL A Q Y +LA + +Q Sbjct: 57 EAAGGPQPAIIPLDLLTATPQNYQQLADTIEEQ 89 >gnl|CDD|167327 PRK02186, PRK02186, argininosuccinate lyase; Provisional. Length = 887 Score = 27.5 bits (61), Expect = 3.9 Identities = 8/24 (33%), Positives = 12/24 (50%) Query: 95 LLGIEMILGGEKDRLFRLDKALSV 118 LL ++ L E LF L + + V Sbjct: 576 LLAVDGALARETHALFALFEHIDV 599 >gnl|CDD|184501 PRK14093, PRK14093, UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional. Length = 479 Score = 27.0 bits (60), Expect = 4.9 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 3/32 (9%) Query: 5 KSRIITIANQKGGVGKTTTAINLSTALAAIGE 36 ++++I + G VGKT+T L L A GE Sbjct: 107 EAKVIAVT---GSVGKTSTKEALRGVLGAQGE 135 >gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 Score = 27.0 bits (59), Expect = 5.0 Identities = 12/28 (42%), Positives = 15/28 (53%) Query: 17 GVGKTTTAINLSTALAAIGENVLLIDLD 44 G GKTT A L+ L G V+ ID + Sbjct: 12 GSGKTTLARALARELGPPGGGVIYIDGE 39 >gnl|CDD|181799 PRK09361, radB, DNA repair and recombination protein RadB; Provisional. Length = 225 Score = 26.8 bits (60), Expect = 5.7 Identities = 10/27 (37%), Positives = 14/27 (51%) Query: 16 GGVGKTTTAINLSTALAAIGENVLLID 42 G GKT + L+ A G+ V+ ID Sbjct: 32 PGSGKTNICLQLAVEAAKNGKKVIYID 58 >gnl|CDD|132074 TIGR03029, EpsG, chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF). Length = 274 Score = 26.7 bits (59), Expect = 6.1 Identities = 12/36 (33%), Positives = 20/36 (55%) Query: 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLID 42 + + + + K G G + A NL+ + +GE LLID Sbjct: 104 KALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLID 139 >gnl|CDD|182515 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional. Length = 547 Score = 26.5 bits (59), Expect = 6.9 Identities = 12/28 (42%), Positives = 18/28 (64%) Query: 74 INQILIQTAIPNLSIIPSTMDLLGIEMI 101 INQ LI+TA +L ++P + LL + M Sbjct: 36 INQRLIETADTSLLVLPEFLGLLLLLMA 63 >gnl|CDD|178325 PLN02724, PLN02724, Molybdenum cofactor sulfurase. Length = 805 Score = 26.4 bits (58), Expect = 7.0 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 14/74 (18%) Query: 50 STGLGIELYDRKYSSYDLLIEEKNINQILIQTAIPNLSIIPSTMDLLGIEMILGGEKDRL 109 TGL LYDR++ L +IL Q +P + +I + +DL ++++ R Sbjct: 543 ETGL---LYDREWMIQSL------TGEILTQKKVPEMCLITTFIDLESGKLVV-----RA 588 Query: 110 FRLDKALSVQLTSD 123 R D L + L SD Sbjct: 589 PRCDHKLEIPLESD 602 >gnl|CDD|182441 PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional. Length = 318 Score = 26.6 bits (60), Expect = 7.0 Identities = 13/24 (54%), Positives = 15/24 (62%) Query: 17 GVGKTTTAINLSTALAAIGENVLL 40 GVGKTTT L+ A G+ VLL Sbjct: 124 GVGKTTTIGKLAHKYKAQGKKVLL 147 >gnl|CDD|181656 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated. Length = 598 Score = 26.4 bits (59), Expect = 7.5 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 3/34 (8%) Query: 17 GVGKTTTAINLSTALAAIGENVLL---IDLDPQG 47 GVGKTTTA L+ AL G + IDL G Sbjct: 56 GVGKTTTARILARALNYEGPDGDGGPTIDLCGVG 89 >gnl|CDD|184403 PRK13929, PRK13929, rod-share determining protein MreBH; Provisional. Length = 335 Score = 26.4 bits (58), Expect = 8.2 Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 6/79 (7%) Query: 64 SYDLLIEEKNINQILIQTAIPNLSIIPSTMDLLGIEMILGGEKDRLFR---LDKALS--- 117 Y+LLI E+ Q+ ++ + P TM++ G +++ G K + A+ Sbjct: 196 KYNLLIGERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLESKEIQGAMRESL 255 Query: 118 VQLTSDFSYIFLDCPPSFN 136 + + DCPP + Sbjct: 256 LHILEAIRATLEDCPPELS 274 >gnl|CDD|179086 PRK00683, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional. Length = 418 Score = 26.3 bits (58), Expect = 8.3 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 5/44 (11%) Query: 3 EKKSRIITIANQKGGV-----GKTTTAINLSTALAAIGENVLLI 41 EK + +K GV K TT + AL A+G V++I Sbjct: 275 EKPPHRMEYLGEKDGVHYINDSKATTVSAVEKALLAVGNQVIVI 318 >gnl|CDD|185113 PRK15191, PRK15191, fimbrial protein BcfF; Provisional. Length = 172 Score = 26.2 bits (57), Expect = 8.3 Identities = 14/41 (34%), Positives = 23/41 (56%) Query: 19 GKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYD 59 G T + + +S + AA N L+ L + ++G+GI LYD Sbjct: 77 GSTASGVTVSFSGAADSRNTDLLALTAGESDASGIGIALYD 117 >gnl|CDD|182793 PRK10867, PRK10867, signal recognition particle protein; Provisional. Length = 433 Score = 26.2 bits (59), Expect = 8.7 Identities = 8/19 (42%), Positives = 11/19 (57%) Query: 175 RTVNSALDIQGIILTMFDS 193 + N AL + G+ILT D Sbjct: 234 KAFNEALGLTGVILTKLDG 252 >gnl|CDD|161846 TIGR00379, cobB, cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation. Length = 449 Score = 26.3 bits (58), Expect = 9.4 Identities = 11/30 (36%), Positives = 15/30 (50%) Query: 9 ITIANQKGGVGKTTTAINLSTALAAIGENV 38 + IA GVGKTT + + AL+ V Sbjct: 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRV 31 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.317 0.135 0.365 Gapped Lambda K H 0.267 0.0715 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 4,115,967 Number of extensions: 259528 Number of successful extensions: 694 Number of sequences better than 10.0: 1 Number of HSP's gapped: 680 Number of HSP's successfully gapped: 75 Length of query: 265 Length of database: 5,994,473 Length adjustment: 92 Effective length of query: 173 Effective length of database: 4,006,537 Effective search space: 693130901 Effective search space used: 693130901 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 56 (25.4 bits)