HHsearch alignment for GI: 254780807 and conserved domain: COG0030

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis].
Probab=91.00  E-value=0.94  Score=25.18  Aligned_cols=59  Identities=15%  Similarity=0.108  Sum_probs=40.9

Q ss_pred             CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHH
Q ss_conf             34431111146773356565227554663478750000389999999997389809980426653
Q gi|254780807|r   71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEA  135 (168)
Q Consensus        71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~  135 (168)
T Consensus        30 ~~d~VlEIGpG~Ga--LT~~Ll~---~~~~v~aiEiD~~l~~~L~~~~~-~~~n~~vi~~DaLk~   88 (259)
T COG0030          30 PGDNVLEIGPGLGA--LTEPLLE---RAARVTAIEIDRRLAEVLKERFA-PYDNLTVINGDALKF   88 (259)
T ss_pred             CCCEEEEECCCCCH--HHHHHHH---HCCEEEEEEECHHHHHHHHHHHC-CCCCEEEEECCHHCC
T ss_conf             99869997898778--8999996---06957999968899999997506-566559994724247