HHsearch alignment for GI: 254780807 and conserved domain: COG0030
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis].
Probab=91.00 E-value=0.94 Score=25.18 Aligned_cols=59 Identities=15% Similarity=0.108 Sum_probs=40.9
Q ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHH
Q ss_conf 34431111146773356565227554663478750000389999999997389809980426653
Q gi|254780807|r 71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEA 135 (168)
Q Consensus 71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~ 135 (168)
T Consensus 30 ~~d~VlEIGpG~Ga--LT~~Ll~---~~~~v~aiEiD~~l~~~L~~~~~-~~~n~~vi~~DaLk~ 88 (259)
T COG0030 30 PGDNVLEIGPGLGA--LTEPLLE---RAARVTAIEIDRRLAEVLKERFA-PYDNLTVINGDALKF 88 (259)
T ss_pred CCCEEEEECCCCCH--HHHHHHH---HCCEEEEEEECHHHHHHHHHHHC-CCCCEEEEECCHHCC
T ss_conf 99869997898778--8999996---06957999968899999997506-566559994724247