HHsearch alignment for GI: 254780807 and conserved domain: pfam08704
>pfam08704 GCD14 tRNA methyltransferase complex GCD14 subunit. GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA.
Probab=91.77 E-value=1.1 Score=24.68 Aligned_cols=90 Identities=12% Similarity=0.060 Sum_probs=58.6
Q ss_pred CCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC-CC-EEEECHH-HH-HHH-CCCCCC
Q ss_conf 1234431111146773356565227554663478750000389999999997389-80-9980426-65-331-247986
Q gi|254780807|r 69 HPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAA-RG-KVFACRI-QE-APQ-MITTCD 143 (168)
Q Consensus 69 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L-~~-~vi~~r~-e~-~~~-~~~~~d 143 (168)
T Consensus 100 i~PG~~VlEaGtGSGsLT~~Lara--vgp~G~v~t~E~~e~r~~~A~~n~~~~g~~~~v~~~~rDv~~~gf~~~~~~~~D 177 (309)
T pfam08704 100 LKPGSVVCESGTGSGSLSHAIART--VAPTGHLYTFEFHEQRADKAREEFREHGLDSLVTVTHRDVCKSGFDTEVSNKAD 177 (309)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHH--HCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHCCCCCCCCCCCCC
T ss_conf 899999998367842999999997--488865999844789999999999874987505889852001366644566435
Q ss_pred EEEECCCCCHHHHHHHH
Q ss_conf 99991479989999984
Q gi|254780807|r 144 VISARALADLDTLLEYS 160 (168)
Q Consensus 144 ~v~sRA~a~l~~ll~~~ 160 (168)
T Consensus 178 ~VfLDlp~PW~ai~~~~ 194 (309)
T pfam08704 178 AVFLDLPAPWEAIPHAA 194 (309)
T ss_pred EEEECCCCHHHHHHHHH
T ss_conf 89975899799889999