HHsearch results for GI: 254780807 and protein with PDBid: 1g8a_A
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 1pry_A
Probab=97.18 E-value=0.00098 Score=41.14 Aligned_cols=94 Identities=17% Similarity=0.060 Sum_probs=60.9
Q ss_pred CCCCCCCEEECCCCCHHHHHHH-HCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHH---HHHHCCCCCCE
Q ss_conf 1234431111146773356565-2275546634787500003899999999973898099804266---53312479869
Q gi|254780807|r 69 HPYPSIWIDLGSGGGFPGIITS-IQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQ---EAPQMITTCDV 144 (168)
Q Consensus 69 ~~~~~~ilDiGSGaGfPGi~la-I~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e---~~~~~~~~~d~ 144 (168)
+.++.+|+|+|+|.|.....+| ++-|+ +.|+.+|.++....-+++.+++.+. ...+...+. ..+.....+|+
T Consensus 71 i~pG~~VLDlG~G~G~~~~~la~~vg~~---G~V~avD~s~~~l~~l~~~~~~~~n-i~~v~~da~~~~~~~~~~~~vd~ 146 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWE---GKIFGIEFSPRVLRELVPIVEERRN-IVPILGDATKPEEYRALVPKVDV 146 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTT---SEEEEEESCHHHHHHHHHHHSSCTT-EEEEECCTTCGGGGTTTCCCEEE
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHCCC---CEEEEEECCHHHHHHHHHHHHHCCC-CEEEEEECCCHHHCCCCCCEEEE
T ss_conf 8999999997178788999999984899---6699998999999999987876698-34999876794465445671999
Q ss_pred EEECC--CCCHHHHHHHHHHHHCC
Q ss_conf 99914--79989999984885206
Q gi|254780807|r 145 ISARA--LADLDTLLEYSFPWLYQ 166 (168)
Q Consensus 145 v~sRA--~a~l~~ll~~~~pllk~ 166 (168)
+.+=- ......++.-+..+||+
T Consensus 147 v~~~~~~~~~~~~~l~~~~~~Lkp 170 (227)
T 1g8a_A 147 IFEDVAQPTQAKILIDNAEVYLKR 170 (227)
T ss_dssp EEECCCSTTHHHHHHHHHHHHEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHCCC
T ss_conf 997600054068999999984599