HHsearch results for GI: 254780807 and protein with PDBid: 1nkv_A
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=97.81 E-value=4.7e-05 Score=48.77 Aligned_cols=92 Identities=14% Similarity=0.007 Sum_probs=68.5
Q ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCC--CEEEECHHHHHHHCCCCCCEEEE
Q ss_conf 2344311111467733565652275546634787500003899999999973898--09980426653312479869999
Q gi|254780807|r 70 PYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAAR--GKVFACRIQEAPQMITTCDVISA 147 (168)
Q Consensus 70 ~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~--~~vi~~r~e~~~~~~~~~d~v~s 147 (168)
+.+.+|+|||+|.|-..+.++-. + +..++.||.+..-+...+..+.+.|+. ++++.+.+++.. ....||.|++
T Consensus 35 ~pg~rVLDiGcG~G~~~~~la~~-~---~~~v~gvD~s~~~l~~a~~~~~~~gl~~~v~~~~~d~~~~~-~~~~fD~v~~ 109 (256)
T 1nkv_A 35 KPGTRILDLGSGSGEMLCTWARD-H---GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV-ANEKCDVAAC 109 (256)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHH-T---CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC-CSSCEEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHH-C---CCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCC-CCCCEEEEEE
T ss_conf 99999999858888899999986-4---99899998983677899886776065544441136364505-6784469999
Q ss_pred CCC----CCHHHHHHHHHHHHCC
Q ss_conf 147----9989999984885206
Q gi|254780807|r 148 RAL----ADLDTLLEYSFPWLYQ 166 (168)
Q Consensus 148 RA~----a~l~~ll~~~~pllk~ 166 (168)
..+ .+...+++-....||+
T Consensus 110 ~~~~~~~~~~~~~l~~~~r~Lkp 132 (256)
T 1nkv_A 110 VGATWIAGGFAGAEELLAQSLKP 132 (256)
T ss_dssp ESCGGGTSSSHHHHHHHTTSEEE
T ss_pred ECCEECCCCHHHHHHHHHHHCCC
T ss_conf 74410268999999999997393