HHsearch results for GI: 254780807 and protein with PDBid: 2pjd_A

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=98.23  E-value=2.4e-06  Score=56.28  Aligned_cols=73  Identities=18%  Similarity=0.282  Sum_probs=62.2

Q ss_pred             CCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCEEEEC
Q ss_conf             344311111467733565652275546634787500003899999999973898099804266533124798699991
Q gi|254780807|r   71 YPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVISAR  148 (168)
Q Consensus        71 ~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e~~~~~~~~~d~v~sR  148 (168)
                      ..++++|+|+|+|.-++.++-..|+.+   |+++|.+..-+...+.-....++++.++.+..-+  ....+||.|++-
T Consensus       196 ~~~~VLDlGcG~G~l~~~la~~~p~~~---v~~vD~s~~al~~ar~n~~~n~l~~~~~~~d~~~--~~~~~fD~Iv~N  268 (343)
T 2pjd_A          196 TKGKVLDVGCGAGVLSVAFARHSPKIR---LTLCDVSAPAVEASRATLAANGVEGEVFASNVFS--EVKGRFDMIISN  268 (343)
T ss_dssp             CCSBCCBTTCTTSHHHHHHHHHCTTCB---CEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTT--TCCSCEEEEEEC
T ss_pred             CCCEEEEECCCCCHHHHHHHHHCCCCE---EEEEECCHHHHHHHHHHHHHCCCCEEEEECCCHH--CCCCCCCEEEEC
T ss_conf             898299932527799999999789978---9999899999999999999849937999644012--266554589988