HHsearch results for GI: 254780807 and protein with PDBid: 2yvl_A
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural genomics, NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus VF5}
Probab=97.75 E-value=0.00012 Score=46.39 Aligned_cols=113 Identities=17% Similarity=0.104 Sum_probs=77.8
Q ss_pred ECCHHHHHHHHHH---------HHHHHHHC--CCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHH
Q ss_conf 0899999898646---------35643100--123443111114677335656522755466347875000038999999
Q gi|254780807|r 48 SSTVEDFWIRHVE---------DSLRVFQL--HPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRY 116 (168)
Q Consensus 48 ~~~~~~~~~rHi~---------DSl~~~~~--~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~ 116 (168)
+-+..++|.+.+- |+.++... +..+.+++|+|||.|.-.+.||=. ...|+-+|.++..+...++
T Consensus 57 ~p~~~d~~~~~~~r~~qiiypkD~~~Ii~~l~i~pG~rVLEiGtGsG~lt~~La~~-----~g~v~t~e~~e~~~~~A~~ 131 (248)
T 2yvl_A 57 RPTLEEIILLGFERKTQIIYPKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEV-----AGEVWTFEAVEEFYKTAQK 131 (248)
T ss_dssp CCCHHHHHHHTSCCSSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-----SSEEEEECSCHHHHHHHHH
T ss_pred CCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHC-----CCEEEEECCCHHHHHHHHH
T ss_conf 79808998454888874067899999999828999997997374311999999860-----7879998288999999999
Q ss_pred HHHHHCC-CC-EEEECHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 9997389-80-99804266533124798699991479989999984885206
Q gi|254780807|r 117 VVQKTAA-RG-KVFACRIQEAPQMITTCDVISARALADLDTLLEYSFPWLYQ 166 (168)
Q Consensus 117 ~~~~L~L-~~-~vi~~r~e~~~~~~~~~d~v~sRA~a~l~~ll~~~~pllk~ 166 (168)
-.++.++ ++ ++++..+.+..-....||.|+.-.-.|+.. ++-+.+.||+
T Consensus 132 n~~~~g~~~nv~~~~~D~~~~~~~~~~fD~V~ld~p~p~~~-l~~~~~~LKp 182 (248)
T 2yvl_A 132 NLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVDVREPWHY-LEKVHKSLME 182 (248)
T ss_dssp HHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEECSSCGGGG-HHHHHHHBCT
T ss_pred HHHHHCCCCCEEEEECCHHHCCCCCCCCCEEEEECCCHHHH-HHHHHHHCCC
T ss_conf 89970057705999912221432458789999917876888-9999984288