HHsearch results for GI: 254780807 and protein with PDBid: 3dmg_A

>3dmg_A Probable ribosomal RNA small subunit methyltransferase; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=98.19  E-value=1.4e-05  Score=51.83  Aligned_cols=106  Identities=14%  Similarity=0.044  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHH--HCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHH
Q ss_conf             98646356431--0012344311111467733565652275546634787500003899999999973898099804266
Q gi|254780807|r   56 IRHVEDSLRVF--QLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQ  133 (168)
Q Consensus        56 ~rHi~DSl~~~--~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e  133 (168)
                      .+..++.+.-.  .....+++|+|+|+|.|.-++.++-..     ..++.+|.+..-+...++.....++++.++.....
T Consensus       216 s~~ll~~l~~~~~~~~~~g~~VLDlGcG~G~~~~~la~~~-----~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~  290 (381)
T 3dmg_A          216 SLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMG-----AEVVGVEDDLASVLSLQKGLEANALKAQALHSDVD  290 (381)
T ss_dssp             HHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTT-----CEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTT
T ss_pred             HHHHHHHHHHHHCCCCCCCCEEEEEEEECCHHHHHHHHCC-----CEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             9999998787526668999989999601048889767519-----88741469999999999999982997388530100


Q ss_pred             HHHHCCCCCCEEEECCCC---------CHHHHHHHHHHHHCC
Q ss_conf             533124798699991479---------989999984885206
Q gi|254780807|r  134 EAPQMITTCDVISARALA---------DLDTLLEYSFPWLYQ  166 (168)
Q Consensus       134 ~~~~~~~~~d~v~sRA~a---------~l~~ll~~~~pllk~  166 (168)
                      +......+||+|++-..-         ....+++-+...||+
T Consensus       291 ~~~~~~~~fD~Iv~n~~~h~~~~~~~~~~~~~l~~~~~~Lkp  332 (381)
T 3dmg_A          291 EALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRP  332 (381)
T ss_dssp             TTSCTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEE
T ss_pred             CCCCCCCCEEEEEECCCHHHCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             144667986899989324533436889999999999987584