HHsearch results for GI: 254780807 and protein with PDBid: 3dmg_A
>3dmg_A Probable ribosomal RNA small subunit methyltransferase; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=98.19 E-value=1.4e-05 Score=51.83 Aligned_cols=106 Identities=14% Similarity=0.044 Sum_probs=73.5
Q ss_pred HHHHHHHHHHH--HCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECHHH
Q ss_conf 98646356431--0012344311111467733565652275546634787500003899999999973898099804266
Q gi|254780807|r 56 IRHVEDSLRVF--QLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQ 133 (168)
Q Consensus 56 ~rHi~DSl~~~--~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~~vi~~r~e 133 (168)
.+..++.+.-. .....+++|+|+|+|.|.-++.++-.. ..++.+|.+..-+...++.....++++.++.....
T Consensus 216 s~~ll~~l~~~~~~~~~~g~~VLDlGcG~G~~~~~la~~~-----~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~ 290 (381)
T 3dmg_A 216 SLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMG-----AEVVGVEDDLASVLSLQKGLEANALKAQALHSDVD 290 (381)
T ss_dssp HHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTT-----CEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTT
T ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEEEECCHHHHHHHHCC-----CEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 9999998787526668999989999601048889767519-----88741469999999999999982997388530100
Q ss_pred HHHHCCCCCCEEEECCCC---------CHHHHHHHHHHHHCC
Q ss_conf 533124798699991479---------989999984885206
Q gi|254780807|r 134 EAPQMITTCDVISARALA---------DLDTLLEYSFPWLYQ 166 (168)
Q Consensus 134 ~~~~~~~~~d~v~sRA~a---------~l~~ll~~~~pllk~ 166 (168)
+......+||+|++-..- ....+++-+...||+
T Consensus 291 ~~~~~~~~fD~Iv~n~~~h~~~~~~~~~~~~~l~~~~~~Lkp 332 (381)
T 3dmg_A 291 EALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRP 332 (381)
T ss_dssp TTSCTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEE
T ss_pred CCCCCCCCEEEEEECCCHHHCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 144667986899989324533436889999999999987584