HHsearch results for GI: 254780807 and protein with PDBid: 3mti_A
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus}
Probab=98.21 E-value=8e-06 Score=53.20 Aligned_cols=80 Identities=9% Similarity=-0.015 Sum_probs=63.4
Q ss_pred HHHCCCCCCCCEEECCCCCHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCC-EEEECHHHHHHH-CCCCC
Q ss_conf 3100123443111114677335656522755466347875000038999999999738980-998042665331-24798
Q gi|254780807|r 65 VFQLHPYPSIWIDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAPQ-MITTC 142 (168)
Q Consensus 65 ~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~~~~v~Lves~~KK~~FL~~~~~~L~L~~-~vi~~r~e~~~~-~~~~~ 142 (168)
+.++++++..|+|+|+|.|.-++.|| .|. .+|+.+|-++..+...++-+++.++++ +++++..+++.. ....+
T Consensus 16 l~~~l~~~~~VLD~gcG~G~~t~~LA--~~~---~~V~aiDis~~al~~a~~n~~~~~l~nv~~~~~~~~~l~~~~~~~~ 90 (185)
T 3mti_A 16 LAEVLDDESIVVDATMGNGNDTAFLA--GLS---KKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPI 90 (185)
T ss_dssp HHTTCCTTCEEEESCCTTSHHHHHHH--TTS---SEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCE
T ss_pred HHHHCCCCCEEEEEEEECCHHHHHHH--HCC---CEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCC
T ss_conf 99658999999999638889999998--269---9899758987888789999998299848999936777555135666
Q ss_pred CEEEECC
Q ss_conf 6999914
Q gi|254780807|r 143 DVISARA 149 (168)
Q Consensus 143 d~v~sRA 149 (168)
|.++...
T Consensus 91 ~~v~~~~ 97 (185)
T 3mti_A 91 RAAIFNL 97 (185)
T ss_dssp EEEEEEE
T ss_pred CEEEEEC
T ss_conf 5699952