RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780807|ref|YP_003065220.1| glucose-inhibited division protein B [Candidatus Liberibacter asiaticus str. psy62] (168 letters) >gnl|CDD|178868 PRK00107, gidB, 16S rRNA methyltransferase GidB; Reviewed. Length = 187 Score = 152 bits (387), Expect = 4e-38 Identities = 51/139 (36%), Positives = 75/139 (53%), Gaps = 5/139 (3%) Query: 27 EKLEYFYFLFLKWSKKINLVSSSTVEDFWIRHVEDSLRVFQLHPYPSIWIDLGSGGGFPG 86 E+LE + L +KW+KK NL + E+ W RH+ DSL + P +D+GSG GFPG Sbjct: 1 EQLEAYVELLVKWNKKYNLTAIRDPEELWERHILDSLAIAPYLPGGERVLDVGSGAGFPG 60 Query: 87 IITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAPQMITTCDVI 145 I +I ++ V L++S KK +FLR V + + V R +E Q DV+ Sbjct: 61 IPLAIARPELK---VTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVV 116 Query: 146 SARALADLDTLLEYSFPWL 164 ++RA+A L L+E P L Sbjct: 117 TSRAVASLSDLVELCLPLL 135 >gnl|CDD|129244 TIGR00138, gidB, 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. Length = 181 Score = 107 bits (270), Expect = 1e-24 Identities = 52/139 (37%), Positives = 75/139 (53%), Gaps = 10/139 (7%) Query: 29 LEYFYFLFLKWSKKINLVSSSTVEDFWIRHVEDSLRVFQLHPYPSI--WIDLGSGGGFPG 86 L+ + L KW+K+ NL S T E+ W RH+ DSL++ Y ID+GSG GFPG Sbjct: 1 LKAYLELLQKWNKRFNLTSLKTPEEIWERHILDSLKLL---EYLDGKKVIDIGSGAGFPG 57 Query: 87 IITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAPQMITTCDVI 145 I +I ++ + L+ES +KK +FLR V + ++ R E Q DVI Sbjct: 58 IPLAIARPELK---LTLLESNHKKVAFLREVKAELGLNNVEIVNGRA-EDFQHEEQFDVI 113 Query: 146 SARALADLDTLLEYSFPWL 164 ++RALA L+ LLE + L Sbjct: 114 TSRALASLNVLLELTLNLL 132 >gnl|CDD|183351 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed. Length = 272 Score = 26.5 bits (59), Expect = 3.9 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 76 IDLGSGGGF 84 +DLGSGGGF Sbjct: 82 LDLGSGGGF 90 >gnl|CDD|180175 PRK05632, PRK05632, phosphate acetyltransferase; Reviewed. Length = 684 Score = 26.3 bits (59), Expect = 4.0 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 17/66 (25%) Query: 93 LSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVISARALAD 152 L+S+ GL+ +E K K F + + Q + E ++ A Sbjct: 16 LTSVSLGLMRALERKGVKVGFFKPIAQ--------PPLTMSEVEALL---------ASGQ 58 Query: 153 LDTLLE 158 LD LLE Sbjct: 59 LDELLE 64 >gnl|CDD|179174 PRK00941, PRK00941, acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated. Length = 781 Score = 26.1 bits (58), Expect = 5.3 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%) Query: 134 EAPQMITTCDVISARALADLDTLLEY 159 EAP +I T I + L DL+ LEY Sbjct: 141 EAP-IIRTVTGIKPKTLGDLEKALEY 165 >gnl|CDD|180621 PRK06556, PRK06556, vitamin B12-dependent ribonucleotide reductase; Validated. Length = 953 Score = 25.7 bits (57), Expect = 6.6 Identities = 7/15 (46%), Positives = 10/15 (66%) Query: 40 SKKINLVSSSTVEDF 54 SK +N+ +TVED Sbjct: 657 SKTVNMPEDATVEDI 671 >gnl|CDD|180331 PRK05972, ligD, ATP-dependent DNA ligase; Reviewed. Length = 860 Score = 25.3 bits (56), Expect = 7.5 Identities = 7/20 (35%), Positives = 12/20 (60%) Query: 105 ESKNKKASFLRYVVQKTAAR 124 E++ + LR+V+QK A Sbjct: 24 EARRAPSKALRFVIQKHDAT 43 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.322 0.137 0.412 Gapped Lambda K H 0.267 0.0719 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 2,645,853 Number of extensions: 153210 Number of successful extensions: 290 Number of sequences better than 10.0: 1 Number of HSP's gapped: 285 Number of HSP's successfully gapped: 11 Length of query: 168 Length of database: 5,994,473 Length adjustment: 86 Effective length of query: 82 Effective length of database: 4,136,185 Effective search space: 339167170 Effective search space used: 339167170 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 53 (24.2 bits)