RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780807|ref|YP_003065220.1| glucose-inhibited division
protein B [Candidatus Liberibacter asiaticus str. psy62]
         (168 letters)



>gnl|CDD|178868 PRK00107, gidB, 16S rRNA methyltransferase GidB; Reviewed.
          Length = 187

 Score =  152 bits (387), Expect = 4e-38
 Identities = 51/139 (36%), Positives = 75/139 (53%), Gaps = 5/139 (3%)

Query: 27  EKLEYFYFLFLKWSKKINLVSSSTVEDFWIRHVEDSLRVFQLHPYPSIWIDLGSGGGFPG 86
           E+LE +  L +KW+KK NL +    E+ W RH+ DSL +    P     +D+GSG GFPG
Sbjct: 1   EQLEAYVELLVKWNKKYNLTAIRDPEELWERHILDSLAIAPYLPGGERVLDVGSGAGFPG 60

Query: 87  IITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAPQMITTCDVI 145
           I  +I    ++   V L++S  KK +FLR V  +   +   V   R +E  Q     DV+
Sbjct: 61  IPLAIARPELK---VTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVV 116

Query: 146 SARALADLDTLLEYSFPWL 164
           ++RA+A L  L+E   P L
Sbjct: 117 TSRAVASLSDLVELCLPLL 135


>gnl|CDD|129244 TIGR00138, gidB, 16S rRNA methyltransferase GidB.  GidB
           (glucose-inhibited division protein B) appears to be
           present and in a single copy in nearly all complete
           eubacterial genomes. It is missing only from some
           obligate intracellular species of various lineages
           (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera,
           etc.). GidB shows a methytransferase fold in its the
           crystal structure, and acts as a 7-methylguanosine
           (m(7)G) methyltransferase, apparently specific to 16S
           rRNA.
          Length = 181

 Score =  107 bits (270), Expect = 1e-24
 Identities = 52/139 (37%), Positives = 75/139 (53%), Gaps = 10/139 (7%)

Query: 29  LEYFYFLFLKWSKKINLVSSSTVEDFWIRHVEDSLRVFQLHPYPSI--WIDLGSGGGFPG 86
           L+ +  L  KW+K+ NL S  T E+ W RH+ DSL++     Y      ID+GSG GFPG
Sbjct: 1   LKAYLELLQKWNKRFNLTSLKTPEEIWERHILDSLKLL---EYLDGKKVIDIGSGAGFPG 57

Query: 87  IITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARG-KVFACRIQEAPQMITTCDVI 145
           I  +I    ++   + L+ES +KK +FLR V  +      ++   R  E  Q     DVI
Sbjct: 58  IPLAIARPELK---LTLLESNHKKVAFLREVKAELGLNNVEIVNGRA-EDFQHEEQFDVI 113

Query: 146 SARALADLDTLLEYSFPWL 164
           ++RALA L+ LLE +   L
Sbjct: 114 TSRALASLNVLLELTLNLL 132


>gnl|CDD|183351 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed.
          Length = 272

 Score = 26.5 bits (59), Expect = 3.9
 Identities = 8/9 (88%), Positives = 9/9 (100%)

Query: 76 IDLGSGGGF 84
          +DLGSGGGF
Sbjct: 82 LDLGSGGGF 90


>gnl|CDD|180175 PRK05632, PRK05632, phosphate acetyltransferase; Reviewed.
          Length = 684

 Score = 26.3 bits (59), Expect = 4.0
 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 17/66 (25%)

Query: 93  LSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMITTCDVISARALAD 152
           L+S+  GL+  +E K  K  F + + Q            + E   ++         A   
Sbjct: 16  LTSVSLGLMRALERKGVKVGFFKPIAQ--------PPLTMSEVEALL---------ASGQ 58

Query: 153 LDTLLE 158
           LD LLE
Sbjct: 59  LDELLE 64


>gnl|CDD|179174 PRK00941, PRK00941, acetyl-CoA decarbonylase/synthase complex
           subunit alpha; Validated.
          Length = 781

 Score = 26.1 bits (58), Expect = 5.3
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 134 EAPQMITTCDVISARALADLDTLLEY 159
           EAP +I T   I  + L DL+  LEY
Sbjct: 141 EAP-IIRTVTGIKPKTLGDLEKALEY 165


>gnl|CDD|180621 PRK06556, PRK06556, vitamin B12-dependent ribonucleotide reductase;
           Validated.
          Length = 953

 Score = 25.7 bits (57), Expect = 6.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 40  SKKINLVSSSTVEDF 54
           SK +N+   +TVED 
Sbjct: 657 SKTVNMPEDATVEDI 671


>gnl|CDD|180331 PRK05972, ligD, ATP-dependent DNA ligase; Reviewed.
          Length = 860

 Score = 25.3 bits (56), Expect = 7.5
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 105 ESKNKKASFLRYVVQKTAAR 124
           E++   +  LR+V+QK  A 
Sbjct: 24  EARRAPSKALRFVIQKHDAT 43


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.322    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0719    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,645,853
Number of extensions: 153210
Number of successful extensions: 290
Number of sequences better than 10.0: 1
Number of HSP's gapped: 285
Number of HSP's successfully gapped: 11
Length of query: 168
Length of database: 5,994,473
Length adjustment: 86
Effective length of query: 82
Effective length of database: 4,136,185
Effective search space: 339167170
Effective search space used: 339167170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)