RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780807|ref|YP_003065220.1| glucose-inhibited division
protein B [Candidatus Liberibacter asiaticus str. psy62]
         (168 letters)



>1jsx_A Glucose-inhibited division protein B; methyltransferase fold,
           structural genomics, PSI, protein structure initiative;
           2.40A {Escherichia coli} SCOP: c.66.1.20
          Length = 207

 Score =  111 bits (278), Expect = 1e-25
 Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 4/145 (2%)

Query: 20  NVSRETLEKLEYFYFLFLKWSKKINLVSSSTVEDFWIRHVEDSLRVFQLHPYPSIWIDLG 79
           +++     +L  +  +  KW+K  NL S     +  +RH+ DS+ V   +     +ID+G
Sbjct: 15  SLTDHQKNQLIAYVNMLHKWNKAYNLTSVRDPNEMLVRHILDSIVVAP-YLQGERFIDVG 73

Query: 80  SGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEAPQMI 139
           +G G PGI  SI           L++S  K+  FLR V  +             E     
Sbjct: 74  TGPGLPGIPLSIVRPEAH---FTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSE 130

Query: 140 TTCDVISARALADLDTLLEYSFPWL 164
              D + +RA A L+ ++ +     
Sbjct: 131 PPFDGVISRAFASLNDMVSWCHHLP 155


>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA
           methyltransferase, translation, cytoplasm, rRNA
           processing; HET: HIC SAM AMP; 1.50A {Thermus
           thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
          Length = 249

 Score =  108 bits (271), Expect = 6e-25
 Identities = 39/150 (26%), Positives = 63/150 (42%), Gaps = 9/150 (6%)

Query: 24  ETLEKLEYFYFLFLKWSKKINLVSSSTVEDFWIRHVEDSLRVFQLHPYPS--IWIDLGSG 81
             LE     Y L  + S K+NL +    E+  ++H  DSL + +L  +      +DLG+G
Sbjct: 31  PHLEAFSRLYALLQEASGKVNLTALRGEEEVVVKHFLDSLTLLRLPLWQGPLRVLDLGTG 90

Query: 82  GGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEA----PQ 137
            GFPG+   I    +E   + L+++  KK +F+   ++    +G        E       
Sbjct: 91  AGFPGLPLKIVRPELE---LVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAG 147

Query: 138 MITTCDVISARALADLDTLLEYSFPWLYQK 167
                    ARA+A L  L E   P+L   
Sbjct: 148 HREAYARAVARAVAPLCVLSELLLPFLEVG 177


>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative,
           structural genomics, methyltransferase fold, PSI; 1.60A
           {Bacillus subtilis} SCOP: c.66.1.20
          Length = 240

 Score = 94.8 bits (235), Expect = 9e-21
 Identities = 38/155 (24%), Positives = 75/155 (48%), Gaps = 9/155 (5%)

Query: 20  NVSRETLEKLEYFYFLFLKWSKKINLVSSSTVEDFWIRHVEDSLRVFQLHPYPSI--WID 77
           ++S   LE+ E +Y + ++W++KINL S +  ++ +++H  DS+       +  +    D
Sbjct: 17  SLSPRQLEQFELYYDMLVEWNEKINLTSITEKKEVYLKHFYDSITAAFYVDFNQVNTICD 76

Query: 78  LGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKASFLRYVVQKTAARGKVFACRIQEA-- 135
           +G+G GFP +   I    +    V +++S NK+ +FL  + +        F     E   
Sbjct: 77  VGAGAGFPSLPIKICFPHLH---VTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFG 133

Query: 136 --PQMITTCDVISARALADLDTLLEYSFPWLYQKK 168
               +  + D+++ARA+A L  L E   P + +  
Sbjct: 134 QRKDVRESYDIVTARAVARLSVLSELCLPLVKKNG 168


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 31.1 bits (70), Expect = 0.14
 Identities = 28/170 (16%), Positives = 40/170 (23%), Gaps = 79/170 (46%)

Query: 14  YLLNTYNVSRETLEKLEYFYFLFLKWSKKINLVSSSTVEDFWIRHVEDSLRVFQLHPYPS 73
            L      S    + L      F     +I +  +    D   R +  S+          
Sbjct: 431 LL---VPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL--RVLSGSI-------SER 478

Query: 74  I----------W-----------IDLGSGGGFPGIITSIQLSSIEGGLVNLIESKNKKAS 112
           I          W           +D G GG           S + G L +    +NK   
Sbjct: 479 IVDCIIRLPVKWETTTQFKATHILDFGPGG----------ASGL-GVLTH----RNK--- 520

Query: 113 FLRYVVQKTAARGKVFACRIQEAPQMITTCDVISARAL-ADLDTLLEYSF 161
                   T  R                   VI A  L  + D   +Y F
Sbjct: 521 ------DGTGVR-------------------VIVAGTLDINPDD--DYGF 543



 Score = 25.7 bits (56), Expect = 4.9
 Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 16/50 (32%)

Query: 14  YLLNTYNVSRETLEKLEYFYFLFLKWSKKINLVSSSTVEDFWIRHVEDSL 63
            +L+  N+++E ++               +N  +S        + VE SL
Sbjct: 337 PMLSISNLTQEQVQDY-------------VNKTNSHLPAG---KQVEISL 370


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.322    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0552    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,434,870
Number of extensions: 60308
Number of successful extensions: 150
Number of sequences better than 10.0: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 7
Length of query: 168
Length of database: 5,693,230
Length adjustment: 86
Effective length of query: 82
Effective length of database: 3,608,246
Effective search space: 295876172
Effective search space used: 295876172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.6 bits)