HHsearch alignment for GI: 254780808 and conserved domain: COG1252
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].
Probab=97.76 E-value=0.0001 Score=52.99 Aligned_cols=305 Identities=19% Similarity=0.289 Sum_probs=141.4
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9876357889889426899999998589--98999980762601246670022112248999998630399999988631
Q gi|254780808|r 1 MINRSYDVIVIGGGHAGCEAAAVAAKLG--ASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGI 78 (626)
Q Consensus 1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G--~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i 78 (626)
T Consensus 1 ~~~~~--iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl-~-----------~p-lL~ev---------------- 49 (405)
T COG1252 1 MMKKR--IVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL-F-----------TP-LLYEV---------------- 49 (405)
T ss_pred CCCCE--EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC-C-----------CH-HHHHH----------------
T ss_conf 99756--999898679999999764167887189991887666-6-----------30-33556----------------
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 48873078785553467878499999999999970899689800101120258811322203586334454333466431
Q gi|254780808|r 79 QFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFL 158 (626)
Q Consensus 79 ~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl 158 (626)
T Consensus 50 -----------a~g~l----~~~~i~~p~~~~~~~~~~v~~~~~~V~~ID~~~k~V~---~~~~~~i~YD~LVvalGs~~ 111 (405)
T COG1252 50 -----------ATGTL----SESEIAIPLRALLRKSGNVQFVQGEVTDIDRDAKKVT---LADLGEISYDYLVVALGSET 111 (405)
T ss_pred -----------HCCCC----CHHHEECCHHHHHCCCCCEEEEEEEEEEECCCCCEEE---ECCCCCCCCCEEEEECCCCC
T ss_conf -----------32877----7565213089984235744899978999715679899---57887023638999458766
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 01344432023322247511133100001011200544445441011000013443211478766877743565780000
Q gi|254780808|r 159 RGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQI 238 (626)
Q Consensus 159 ~g~~~~g~~~~~~gr~~~~~s~~ls~~l~~~~~~~~r~ktgtppri~~~sidf~~~e~q~~d~~~~~~s~~~~~~~~~q~ 238 (626)
T Consensus 112 ~~f------gi~G~~E~a~~lks~edA~~i---r~---------~l~---~~fe~a~~~~~~~~~lti~IvGgG~TGVEl 170 (405)
T COG1252 112 NYF------GIPGAAEYAFGLKTLEDALRL---RR---------HLL---EAFEKASQEEDDRALLTIVIVGGGPTGVEL 170 (405)
T ss_pred CCC------CCCCHHHHCCCCCCHHHHHHH---HH---------HHH---HHHHHHHCCCCCCCEEEEEEECCCHHHHHH
T ss_conf 768------997878707777889999999---99---------999---999986335643441189998988238999
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----------CCCCCEEEECCC-------
Q ss_conf 00001232001477764024575414432356422255321233567643-----------345201301578-------
Q gi|254780808|r 239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER-----------NGHQIFLEPEGL------- 300 (626)
Q Consensus 239 ~~~~~~t~~~~~~~~~~~~~~~~~~~g~~~~~gprycPsie~k~~~~~~~-----------p~h~VqLrpE~~------- 300 (626)
T Consensus 171 Ag---eL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~v~~~~g~~ 247 (405)
T COG1252 171 AG---ELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVTEVTPDGVTLKDGEE 247 (405)
T ss_pred HH---HHHHHHHHHHHHHCCCCCCCEEEEECCCCHHCCCCCHHHHHHHHHHHHHCCCEEECCCCEEEECCCCEEECCCCE
T ss_conf 99---999999987653347865318999825712135888899999999999879789869814897699179755883
Q ss_pred ---CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCHHHHCCCCHHHHHHHHHHHCCCEEEEEEEEECCCHH--
Q ss_conf ---776454347766689889999998754340010011000121102354565677654033415662133043346--
Q gi|254780808|r 301 ---NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGY-- 375 (626)
Q Consensus 301 ---~~~~~n~vGFqTsL~~~~Q~rv~r~IPGLEnAef~R~Gy~ieyd~~~P~~L~~tLe~k~~~~LffAGQI~GteGY-- 375 (626)
T Consensus 248 ~I~~~tvvWaaGv~a~-------~~~~~l~~~e---~dr~G---------rl~V~~~L~~~~~~~IFa~GD~A~~~~~~p 308 (405)
T COG1252 248 EIPADTVVWAAGVRAS-------PLLKDLSGLE---TDRRG---------RLVVNPTLQVPGHPDIFAAGDCAAVIDPRP 308 (405)
T ss_pred EEECCEEEECCCCCCC-------HHHHHCCHHH---HCCCC---------CEEECCCCCCCCCCCEEEEECCCCCCCCCC
T ss_conf 7762779985777578-------6666327022---13489---------777578751699898699711103768887
Q ss_pred -----HHHHHHHHHHHHHHHHHCCCCC
Q ss_conf -----6666677899999874203345
Q gi|254780808|r 376 -----EEAAAQGLVAGINSARKSNKLD 397 (626)
Q Consensus 376 -----eEAAAqGl~AGiNa~~~~~~~~ 397 (626)
T Consensus 309 ~P~tAQ~A~Qqg~~~a~ni~~~l~g~~ 335 (405)
T COG1252 309 VPPTAQAAHQQGEYAAKNIKARLKGKP 335 (405)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 998118899999999999999964999