HHsearch alignment for GI: 254780808 and conserved domain: COG1252

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].
Probab=97.76  E-value=0.0001  Score=52.99  Aligned_cols=305  Identities=19%  Similarity=0.289  Sum_probs=141.4

Q ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9876357889889426899999998589--98999980762601246670022112248999998630399999988631
Q gi|254780808|r    1 MINRSYDVIVIGGGHAGCEAAAVAAKLG--ASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGI   78 (626)
Q Consensus         1 m~~~~~dViVIGaG~AG~EAA~~~Ar~G--~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i   78 (626)
T Consensus         1 ~~~~~--iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl-~-----------~p-lL~ev----------------   49 (405)
T COG1252           1 MMKKR--IVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL-F-----------TP-LLYEV----------------   49 (405)
T ss_pred             CCCCE--EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC-C-----------CH-HHHHH----------------
T ss_conf             99756--999898679999999764167887189991887666-6-----------30-33556----------------


Q ss_pred             HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             48873078785553467878499999999999970899689800101120258811322203586334454333466431
Q gi|254780808|r   79 QFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFL  158 (626)
Q Consensus        79 ~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl  158 (626)
T Consensus        50 -----------a~g~l----~~~~i~~p~~~~~~~~~~v~~~~~~V~~ID~~~k~V~---~~~~~~i~YD~LVvalGs~~  111 (405)
T COG1252          50 -----------ATGTL----SESEIAIPLRALLRKSGNVQFVQGEVTDIDRDAKKVT---LADLGEISYDYLVVALGSET  111 (405)
T ss_pred             -----------HCCCC----CHHHEECCHHHHHCCCCCEEEEEEEEEEECCCCCEEE---ECCCCCCCCCEEEEECCCCC
T ss_conf             -----------32877----7565213089984235744899978999715679899---57887023638999458766


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             01344432023322247511133100001011200544445441011000013443211478766877743565780000
Q gi|254780808|r  159 RGVIHIGKLKIPAGRMGDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQI  238 (626)
Q Consensus       159 ~g~~~~g~~~~~~gr~~~~~s~~ls~~l~~~~~~~~r~ktgtppri~~~sidf~~~e~q~~d~~~~~~s~~~~~~~~~q~  238 (626)
T Consensus       112 ~~f------gi~G~~E~a~~lks~edA~~i---r~---------~l~---~~fe~a~~~~~~~~~lti~IvGgG~TGVEl  170 (405)
T COG1252         112 NYF------GIPGAAEYAFGLKTLEDALRL---RR---------HLL---EAFEKASQEEDDRALLTIVIVGGGPTGVEL  170 (405)
T ss_pred             CCC------CCCCHHHHCCCCCCHHHHHHH---HH---------HHH---HHHHHHHCCCCCCCEEEEEEECCCHHHHHH
T ss_conf             768------997878707777889999999---99---------999---999986335643441189998988238999


Q ss_pred             CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----------CCCCCEEEECCC-------
Q ss_conf             00001232001477764024575414432356422255321233567643-----------345201301578-------
Q gi|254780808|r  239 ECGITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGER-----------NGHQIFLEPEGL-------  300 (626)
Q Consensus       239 ~~~~~~t~~~~~~~~~~~~~~~~~~~g~~~~~gprycPsie~k~~~~~~~-----------p~h~VqLrpE~~-------  300 (626)
T Consensus       171 Ag---eL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~v~~~~g~~  247 (405)
T COG1252         171 AG---ELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVTEVTPDGVTLKDGEE  247 (405)
T ss_pred             HH---HHHHHHHHHHHHHCCCCCCCEEEEECCCCHHCCCCCHHHHHHHHHHHHHCCCEEECCCCEEEECCCCEEECCCCE
T ss_conf             99---999999987653347865318999825712135888899999999999879789869814897699179755883


Q ss_pred             ---CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCHHHHCCCCHHHHHHHHHHHCCCEEEEEEEEECCCHH--
Q ss_conf             ---776454347766689889999998754340010011000121102354565677654033415662133043346--
Q gi|254780808|r  301 ---NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGY--  375 (626)
Q Consensus       301 ---~~~~~n~vGFqTsL~~~~Q~rv~r~IPGLEnAef~R~Gy~ieyd~~~P~~L~~tLe~k~~~~LffAGQI~GteGY--  375 (626)
T Consensus       248 ~I~~~tvvWaaGv~a~-------~~~~~l~~~e---~dr~G---------rl~V~~~L~~~~~~~IFa~GD~A~~~~~~p  308 (405)
T COG1252         248 EIPADTVVWAAGVRAS-------PLLKDLSGLE---TDRRG---------RLVVNPTLQVPGHPDIFAAGDCAAVIDPRP  308 (405)
T ss_pred             EEECCEEEECCCCCCC-------HHHHHCCHHH---HCCCC---------CEEECCCCCCCCCCCEEEEECCCCCCCCCC
T ss_conf             7762779985777578-------6666327022---13489---------777578751699898699711103768887


Q ss_pred             -----HHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             -----6666677899999874203345
Q gi|254780808|r  376 -----EEAAAQGLVAGINSARKSNKLD  397 (626)
Q Consensus       376 -----eEAAAqGl~AGiNa~~~~~~~~  397 (626)
T Consensus       309 ~P~tAQ~A~Qqg~~~a~ni~~~l~g~~  335 (405)
T COG1252         309 VPPTAQAAHQQGEYAAKNIKARLKGKP  335 (405)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             998118899999999999999964999