HHsearch alignment for GI: 254780808 and conserved domain: COG1252

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].
Probab=94.59  E-value=0.13  Score=31.10  Aligned_cols=108  Identities=22%  Similarity=0.344  Sum_probs=66.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-------------CEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             578898894268999999985899-------------8999980762601246670022112248999998630399999
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLGA-------------STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRV   72 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G~-------------~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~   72 (626)
T Consensus       156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p----------------------------------  201 (405)
T COG1252         156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGP----------------------------------  201 (405)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC----------------------------------
T ss_conf             1899989882389999999999998765334786531899982571----------------------------------


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHH-HHCCCCCCCCCEEEEEECCCC-CCCCCCC
Q ss_conf             98863148873078785553467878499999999999970899689800-101120258811322203586-3344543
Q gi|254780808|r   73 ADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG-EVAGFNTEKNIISSIVMQDNS-MIRCSTV  150 (626)
Q Consensus        73 aD~~~i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~-eV~~l~~~~~~~~~v~~~~g~-~~~~~~v  150 (626)
T Consensus       202 --------~IL-----p~--------~~~~l~~~a~~~L~~~-GV~v~l~~~Vt~v~~~-----~v~~~~g~~~I~~~tv  254 (405)
T COG1252         202 --------RIL-----PM--------FPPKLSKYAERALEKL-GVEVLLGTPVTEVTPD-----GVTLKDGEEEIPADTV  254 (405)
T ss_pred             --------HHC-----CC--------CCHHHHHHHHHHHHHC-CCEEECCCCEEEECCC-----CEEECCCCEEEECCEE
T ss_conf             --------213-----58--------8889999999999987-9789869814897699-----1797558837762779


Q ss_pred             CCCCCCCCHHHHHH--HHCCCCCCCC
Q ss_conf             33466431013444--3202332224
Q gi|254780808|r  151 VLTTGTFLRGVIHI--GKLKIPAGRM  174 (626)
Q Consensus       151 iiatGtfl~g~~~~--g~~~~~~gr~  174 (626)
T Consensus       255 vWaaGv~a~~~~~~l~~~e~dr~Grl  280 (405)
T COG1252         255 VWAAGVRASPLLKDLSGLETDRRGRL  280 (405)
T ss_pred             EECCCCCCCHHHHHCCHHHHCCCCCE
T ss_conf             98577757866663270221348977