HHsearch alignment for GI: 254780808 and conserved domain: COG1252
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].
Probab=94.59 E-value=0.13 Score=31.10 Aligned_cols=108 Identities=22% Similarity=0.344 Sum_probs=66.1
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCC-------------CEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 578898894268999999985899-------------8999980762601246670022112248999998630399999
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLGA-------------STALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRV 72 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G~-------------~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~ 72 (626)
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p---------------------------------- 201 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGP---------------------------------- 201 (405)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC----------------------------------
T ss_conf 1899989882389999999999998765334786531899982571----------------------------------
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHH-HHCCCCCCCCCEEEEEECCCC-CCCCCCC
Q ss_conf 98863148873078785553467878499999999999970899689800-101120258811322203586-3344543
Q gi|254780808|r 73 ADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQG-EVAGFNTEKNIISSIVMQDNS-MIRCSTV 150 (626)
Q Consensus 73 aD~~~i~~r~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~-eV~~l~~~~~~~~~v~~~~g~-~~~~~~v 150 (626)
T Consensus 202 --------~IL-----p~--------~~~~l~~~a~~~L~~~-GV~v~l~~~Vt~v~~~-----~v~~~~g~~~I~~~tv 254 (405)
T COG1252 202 --------RIL-----PM--------FPPKLSKYAERALEKL-GVEVLLGTPVTEVTPD-----GVTLKDGEEEIPADTV 254 (405)
T ss_pred --------HHC-----CC--------CCHHHHHHHHHHHHHC-CCEEECCCCEEEECCC-----CEEECCCCEEEECCEE
T ss_conf --------213-----58--------8889999999999987-9789869814897699-----1797558837762779
Q ss_pred CCCCCCCCHHHHHH--HHCCCCCCCC
Q ss_conf 33466431013444--3202332224
Q gi|254780808|r 151 VLTTGTFLRGVIHI--GKLKIPAGRM 174 (626)
Q Consensus 151 iiatGtfl~g~~~~--g~~~~~~gr~ 174 (626)
T Consensus 255 vWaaGv~a~~~~~~l~~~e~dr~Grl 280 (405)
T COG1252 255 VWAAGVRASPLLKDLSGLETDRRGRL 280 (405)
T ss_pred EECCCCCCCHHHHHCCHHHHCCCCCE
T ss_conf 98577757866663270221348977