HHsearch alignment for GI: 254780808 and conserved domain: PRK01747
>PRK01747 mnmC 5-methylaminomethyl-2-thiouridine methyltransferase; Reviewed.
Probab=98.63 E-value=3.2e-07 Score=70.80 Aligned_cols=148 Identities=20% Similarity=0.188 Sum_probs=75.3
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCC--------CCCCCCHHHHH--------HHHHHHH---
Q ss_conf 5788988942689999999858998999980762601246670--------02211224899--------9998630---
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNP--------AIGGLGKGHLV--------REIDALD--- 66 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnp--------s~gg~akg~L~--------~Ei~aLg--- 66 (626)
T Consensus 257 ~~VaVIGAGIAGas~A~~LA~rG~~VtVlDr~~~~A~gASGn~aG~l~P~ls~~~~~~sr~~~~a~~~a~~~~~~l~~~~ 336 (660)
T PRK01747 257 RDAAIIGGGIAGAALALALARRGWQVTLYEADEAPAQGASGNRQGALYPLLSKDDNALSRFFRAAFLFARRFYDLEALGV 336 (660)
T ss_pred CCEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 71899893899999999999789968999479875655666731267402578997689999999999999999875468
Q ss_pred -------HHHHHHHH--HHHHHHHHHCCCCCC-----------------------CCCCHH-HHHHHHHHHHHHHHHHH-
Q ss_conf -------39999998--863148873078785-----------------------553467-87849999999999997-
Q gi|254780808|r 67 -------GLMGRVAD--AAGIQFRVLNVKKGP-----------------------AVRGPR-TQADRELYRLAMQREIL- 112 (626)
Q Consensus 67 -------g~m~~~aD--~~~i~~r~ln~skGp-----------------------Av~alr-aqvDR~~fs~~vt~~l~- 112 (626)
T Consensus 337 ~~~~~~~Gvl~la~~e~~~~r~~~~~~~-~~~~~~~~~l~~~ea~~~~g~~~~~~Gl~~p~~G~v~P~~---l~~aLl~~ 412 (660)
T PRK01747 337 AFDHDWCGVLQLAWDEKSAEKIAKMLEA-GLPAELARALSAEEAEALAGLPVPCGGIFYPQGGWLCPAE---LCRALLAA 412 (660)
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHH-CCCCHHHEECCHHHHHHHHCCCCCCCCEEECCCCEECHHH---HHHHHHHH
T ss_conf 6441467569954986889999999974-6994330247999997752998777837825897756899---99999986
Q ss_pred CCCCCEEE-HHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 08996898-00101120258811322203586334454333466431
Q gi|254780808|r 113 SQENLDVI-QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFL 158 (626)
Q Consensus 113 ~~pni~i~-~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl 158 (626)
T Consensus 413 a~~~i~~~~~~~V~~l~~~~~~w~-l~~~~~~~~~Ad~VVlA~G~~s 458 (660)
T PRK01747 413 AGQGLTIHFGHEVARLERVDDQWQ-LDFAGGVLASAPVVVLANGHDA 458 (660)
T ss_pred CCCCEEEEECCEEEEEEECCCEEE-EEECCCCEEECCEEEECCCCCH
T ss_conf 479859992744789997498089-9968992861467999056101