HHsearch alignment for GI: 254780808 and conserved domain: PRK05335

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed.
Probab=90.50  E-value=0.13  Score=30.91  Aligned_cols=58  Identities=21%  Similarity=0.355  Sum_probs=35.6

Q ss_pred             CCCCCCCCCCCC--CCHHHHHH------HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC
Q ss_conf             000000001232--00147776------402457541443235642225532123356764334520130157877
Q gi|254780808|r  235 NRQIECGITRTN--LETHRIIM------ENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGLNT  302 (626)
Q Consensus       235 ~~q~~~~~~~t~--~~~~~~~~------~~~~~~~~~~g~~~~~gprycPsie~k~~~~~~~p~h~VqLrpE~~~~  302 (626)
T Consensus       188 ~dylncpl~~e~y~~f~~~l~~a~~~~~~~~e~~~~feG---------C~pIE~~a~rg~~~lrfgp-~kPvGL~d  253 (434)
T PRK05335        188 ADYLNCPMTKEEYEAFYEALIAAEKAPLKDFEKEKYFEG---------CLPIEVMAERGRETLRFGP-MKPVGLED  253 (434)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC---------CCCHHHHHHCCCCCEECCC-CCCCCCCC
T ss_conf             552238998799889998752002035665445766578---------8778877414765320267-65667778