HHsearch alignment for GI: 254780808 and conserved domain: TIGR01292

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase; InterPro: IPR005982 Reactive oxygen species (ROS) are known mediators of intracellular signaling cascades. Excessive production of ROS may, however, lead to oxidative stress, loss of cell function, and ultimately apoptosis or necrosis. A balance between oxidant and antioxidant intracellular systems is hence vital for cell function, regulation, and adaptation to diverse growth conditions. Thioredoxin reductase in conjunction with thioredoxin is a ubiquitous oxidoreductase system with antioxidant and redox regulatory roles. Thioredoxin reductase (1.8.1.9 from EC) reduces oxidised thioredoxin in the presence of NADPH. Reduced thioredoxin serves as an electron donor for thioredoxin peroxidase which consequently reduces H_2O_2 to H_2O. In mammals, extracellular forms of Trx also have cytokine-like effects. Mammalian TrxR has a highly reactive active site selenocysteine residue resulting in a profound reductive capacity, reducing several substrates in addition to Trx .; GO: 0004791 thioredoxin-disulfide reductase activity, 0019430 removal of superoxide radicals, 0005737 cytoplasm.
Probab=98.25  E-value=4.3e-06  Score=62.80  Aligned_cols=300  Identities=19%  Similarity=0.211  Sum_probs=146.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEE-CCHH-HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             578898894268999999985899899998-0762-60124667002211224899999863039999998863148873
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLGASTALIT-HKTS-TIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVL   83 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~-~~~~-~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~l   83 (626)
T Consensus         1 ~DviIIGaGPAGlTAAIYa~Ra~l~~l~~eg~~~G~aGGql~~T~~vE--------------------------------   48 (321)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLLIEGMEPGIAGGQLTTTTEVE--------------------------------   48 (321)
T ss_pred             CCEEEECCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCEEE--------------------------------
T ss_conf             928998478678889999887467278983577774555333220651--------------------------------


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEH-HHHCCCCCCCC----CEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             07878555346787849999999999997089968980-01011202588----11322203586334454333466431
Q gi|254780808|r   84 NVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQ-GEVAGFNTEKN----IISSIVMQDNSMIRCSTVVLTTGTFL  158 (626)
Q Consensus        84 n~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~-~eV~~l~~~~~----~~~~v~~~~g~~~~~~~viiatGtfl  158 (626)
T Consensus        49 NY---PGf~e~---i~G~~L~~~M~~Qa~~f-G~~~~~G~~v~~v~~~~~~yE~~~F~~~~~--~~y~a~avIiAtGa~~  119 (321)
T TIGR01292        49 NY---PGFPEG---ISGPELMEKMKEQAKKF-GAEIIYGEEVIRVDKSDRAYESDPFKVKTG--KEYTAKAVIIATGAEA  119 (321)
T ss_pred             CC---CCCCCC---CCHHHHHHHHHHHHHHC-CCCEEECCEEEEEECCCCCCCCCEEEEEEC--CEEEEEEEEEECCCHH
T ss_conf             36---868887---66288999999999870-673662670568633788436610389717--5688658999138715


Q ss_pred             HHHHHHHHCCCCCCCC-CCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHCHHHHHH---HHHCCCCCCCCCCCCCCCCCC
Q ss_conf             0134443202332224-751113310000101120054444544101100001344---321147876687774356578
Q gi|254780808|r  159 RGVIHIGKLKIPAGRM-GDSPSNSLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDK---TEKQFADERLIPFSFMTDKIT  234 (626)
Q Consensus       159 ~g~~~~g~~~~~~gr~-~~~~s~~ls~~l~~~~~~~~r~ktgtppri~~~sidf~~---~e~q~~d~~~~~~s~~~~~~~  234 (626)
T Consensus       120 r~----------lg~~kGE~ef~GrGV-----------SyCA~C---DGA~~ffk~K~V~VvGGGds-------------  162 (321)
T TIGR01292       120 RK----------LGIPKGEDEFLGRGV-----------SYCATC---DGASPFFKNKEVAVVGGGDS-------------  162 (321)
T ss_pred             HH----------CCCCCCHHHHCCCCE-----------EEEEHH---CCCCHHHCCCEEEEECCCCH-------------
T ss_conf             42----------378866455326866-----------672231---05401205988999879824-------------


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCC-CCCCCCCEEE-ECCCCCCEEEE
Q ss_conf             00000000123200147776402457541443235642-----22553212335676-4334520130-15787764543
Q gi|254780808|r  235 NRQIECGITRTNLETHRIIMENIKHSAIYSGDIKSYGP-----RYCPSIEDKIVRFG-ERNGHQIFLE-PEGLNTDVVYP  307 (626)
Q Consensus       235 ~~q~~~~~~~t~~~~~~~~~~~~~~~~~~~g~~~~~gp-----rycPsie~k~~~~~-~~p~h~VqLr-pE~~~~~~~n~  307 (626)
T Consensus       163 A~eEA~yL~~~a~kV~lvHRRd~fRA~k~~~~r~~~~~eG~I~~l~n~~v~Ei~G~~~~~V~~-v~i~N~~t~e~~~l~v  241 (321)
T TIGR01292       163 ALEEALYLTRIAKKVTLVHRRDKFRAEKILLDRLKKNPEGKIEFLWNSTVEEIVGDNSKKVES-VKIKNTVTGEEEELKV  241 (321)
T ss_pred             HHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCEEEECCCEEEEEECCCCEEEEE-EEEEECCCCEEEEEEE
T ss_conf             888889998538767999779863632899989983789878996486899996178315533-5899623884889984


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCHHHHCCCCHHHHHHHHHHHCCCEEEEEEEEECCCHH---HHHHHHHHH
Q ss_conf             47766689889999998754340010011000121102354565677654033415662133043346---666667789
Q gi|254780808|r  308 NGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKISGLFLAGQINGTTGY---EEAAAQGLV  384 (626)
Q Consensus       308 vGFqTsL~~~~Q~rv~r~IPGLEnAef~R~Gy~ieyd~~~P~~L~~tLe~k~~~~LffAGQI~GteGY---eEAAAqGl~  384 (626)
T Consensus       242 dGvF~aIG~~P~t~~~~~~---G~~~~D~~GyI~t----~~~~-Gn~~~Ts-v~GvFAAGDv~~kW~~rQ~vTAag~G~~  312 (321)
T TIGR01292       242 DGVFIAIGHEPNTELLKGL---GLLELDEGGYIVT----DEGL-GNTMRTS-VPGVFAAGDVRDKWGFRQAVTAAGDGCI  312 (321)
T ss_pred             CEEEEEECCCCCHHHHHCC---CCEEECCCCCEEE----CCCC-CCEEECC-CCCEEEEEEEECCCCCEEEEEEECHHHH
T ss_conf             4478984120320576507---8346769986886----1754-8612306-6868973044068861376787000689


Q ss_pred             HHHHHHHHC
Q ss_conf             999987420
Q gi|254780808|r  385 AGINSARKS  393 (626)
Q Consensus       385 AGiNa~~~~  393 (626)
T Consensus       313 AA~~a~~yL  321 (321)
T TIGR01292       313 AALSAERYL  321 (321)
T ss_pred             HHHHHHHHC
T ss_conf             999998709