HHsearch alignment for GI: 254780808 and conserved domain: TIGR01373

>TIGR01373 soxB sarcosine oxidase, beta subunit family; InterPro: IPR006278 These sequences represent the beta subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. The model is designated as subfamily rather than equivalog for this reason. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) forms that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form.; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=92.75  E-value=0.1  Score=31.71  Aligned_cols=88  Identities=25%  Similarity=0.413  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHHHHCCEEEE-CCHHHHCCCCHHHHHHHHHHHCCCEEEE-EEEEECCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             8899999987543400100110-0012110235456567765403341566-2133043346666667789999987420
Q gi|254780808|r  316 EEIQHQFIRTIPGLEKVNIIRP-GYAIEYDYINPKELFPTLETKKISGLFL-AGQINGTTGYEEAAAQGLVAGINSARKS  393 (626)
Q Consensus       316 ~~~Q~rv~r~IPGLEnAef~R~-Gy~ieyd~~~P~~L~~tLe~k~~~~Lff-AGQI~GteGYeEAAAqGl~AGiNa~~~~  393 (626)
T Consensus       313 e~v~~~~~emfP~l~r~r~~R~Wg-GivD~~pD---~SPIi~~tP~~nLylNcGW--g~GGFKAtPasG~~f---A~~lA  383 (407)
T TIGR01373       313 EHVLEAILEMFPILSRVRMLRSWG-GIVDVTPD---GSPIIGKTPVPNLYLNCGW--GTGGFKATPASGTVF---AHTLA  383 (407)
T ss_pred             HHHHHHHHHHCCHHHHHEEEECCC-CEEECCCC---CCCCCCCCCCCCCEEECCC--CCCCEEEECCHHHHH---HHHHC
T ss_conf             999999987502233101112158-87840578---8876778888864465324--578803146127899---99970


Q ss_pred             CCC-----CCCCCCCCCCHHHHHHHH
Q ss_conf             334-----565465321079999998
Q gi|254780808|r  394 NKL-----DCICFSRTDSYIGVMIDD  414 (626)
Q Consensus       394 ~~~-----~p~~l~R~eaYiGVlIDD  414 (626)
T Consensus       384 ~g~p~~~~apF~ldRF~~--G~lIDe  407 (407)
T TIGR01373       384 KGEPHDIAAPFTLDRFHS--GRLIDE  407 (407)
T ss_pred             CCCCCCCCCCCCCCCCCC--CCEECC
T ss_conf             798765578720000133--640039