HHsearch alignment for GI: 254780808 and conserved domain: TIGR01373
>TIGR01373 soxB sarcosine oxidase, beta subunit family; InterPro: IPR006278 These sequences represent the beta subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. The model is designated as subfamily rather than equivalog for this reason. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) forms that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form.; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=92.75 E-value=0.1 Score=31.71 Aligned_cols=88 Identities=25% Similarity=0.413 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHCCEEEE-CCHHHHCCCCHHHHHHHHHHHCCCEEEE-EEEEECCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8899999987543400100110-0012110235456567765403341566-2133043346666667789999987420
Q gi|254780808|r 316 EEIQHQFIRTIPGLEKVNIIRP-GYAIEYDYINPKELFPTLETKKISGLFL-AGQINGTTGYEEAAAQGLVAGINSARKS 393 (626)
Q Consensus 316 ~~~Q~rv~r~IPGLEnAef~R~-Gy~ieyd~~~P~~L~~tLe~k~~~~Lff-AGQI~GteGYeEAAAqGl~AGiNa~~~~ 393 (626)
T Consensus 313 e~v~~~~~emfP~l~r~r~~R~Wg-GivD~~pD---~SPIi~~tP~~nLylNcGW--g~GGFKAtPasG~~f---A~~lA 383 (407)
T TIGR01373 313 EHVLEAILEMFPILSRVRMLRSWG-GIVDVTPD---GSPIIGKTPVPNLYLNCGW--GTGGFKATPASGTVF---AHTLA 383 (407)
T ss_pred HHHHHHHHHHCCHHHHHEEEECCC-CEEECCCC---CCCCCCCCCCCCCEEECCC--CCCCEEEECCHHHHH---HHHHC
T ss_conf 999999987502233101112158-87840578---8876778888864465324--578803146127899---99970
Q ss_pred CCC-----CCCCCCCCCCHHHHHHHH
Q ss_conf 334-----565465321079999998
Q gi|254780808|r 394 NKL-----DCICFSRTDSYIGVMIDD 414 (626)
Q Consensus 394 ~~~-----~p~~l~R~eaYiGVlIDD 414 (626)
T Consensus 384 ~g~p~~~~apF~ldRF~~--G~lIDe 407 (407)
T TIGR01373 384 KGEPHDIAAPFTLDRFHS--GRLIDE 407 (407)
T ss_pred CCCCCCCCCCCCCCCCCC--CCEECC
T ss_conf 798765578720000133--640039