HHsearch alignment for GI: 254780808 and conserved domain: TIGR01377

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form; InterPro: IPR006281 This set of sequences describe the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) form that contain a covalent and noncovalent flavin, this entry represents the monomeric form.; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=98.33  E-value=5.1e-07  Score=69.40  Aligned_cols=146  Identities=21%  Similarity=0.275  Sum_probs=91.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH---------------------HHC-CCCC--CC--------------
Q ss_conf             578898894268999999985899899998076---------------------260-1246--67--------------
Q gi|254780808|r    6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT---------------------STI-GSMS--CN--------------   47 (626)
Q Consensus         6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~---------------------~~~-ael~--Cn--------------   47 (626)
T Consensus         1 fDvIVvGAG~~G~~aaY~LAK~~~~~LLleqFd~pH~rGSsHG~sRiIR~aY~Edr~Y~~m~~e~~~lWa~le~E~g~k~   80 (401)
T TIGR01377         1 FDVIVVGAGIMGCFAAYHLAKRGKKTLLLEQFDLPHSRGSSHGQSRIIRKAYPEDRFYTSMVSECYQLWAQLEKEAGTKL   80 (401)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf             95799817613568999987538617887515677678887877100010267863578899999999999862147264


Q ss_pred             --CC---CCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-------------------CCCCCHHHHHHHHH
Q ss_conf             --00---2211224-89999986303999999886314887307878-------------------55534678784999
Q gi|254780808|r   48 --PA---IGGLGKG-HLVREIDALDGLMGRVADAAGIQFRVLNVKKG-------------------PAVRGPRTQADREL  102 (626)
Q Consensus        48 --ps---~gg~akg-~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~skG-------------------pAv~alraqvDR~~  102 (626)
T Consensus        81 h~qT~~l~~G~k~~s~~l~~~-------~a~~~~~~l~H~~~~s~~l~~rf~G~i~~p~n~~g~~~~~gGvl~~----~k  149 (401)
T TIGR01377        81 HRQTGLLLLGPKENSQSLKTI-------VATLSRHGLEHELLSSKQLKQRFPGNIRVPRNEVGLLDELGGVLYA----EK  149 (401)
T ss_pred             ECCCCEEEECCCCCCHHHHHH-------HHHHHHCCCCEEEECCHHHHHCCCCCEECCCCEEEEEECCCCEECH----HH
T ss_conf             313451563157786058999-------9988625523033164123200476234068607887468874622----78


Q ss_pred             HHHHHHHHHHCCCCCEEEHHHHCCCCCC---CCCEEEEEECCCCCCCCCCCCCCCCCCCH-HHHH
Q ss_conf             9999999997089968980010112025---88113222035863344543334664310-1344
Q gi|254780808|r  103 YRLAMQREILSQENLDVIQGEVAGFNTE---KNIISSIVMQDNSMIRCSTVVLTTGTFLR-GVIH  163 (626)
Q Consensus       103 fs~~vt~~l~~~pni~i~~~eV~~l~~~---~~~~~~v~~~~g~~~~~~~viiatGtfl~-g~~~  163 (626)
T Consensus       150 a~~a~q~l~~~~Ga~v~d~~kV~~i~~~GesGe~~vt~k-t~~~sy~a~~lvvtaGaW~s~kLl~  213 (401)
T TIGR01377       150 ALRALQELAEAHGAIVRDGTKVVEIKPDGESGELLVTVK-TTKDSYQAKKLVVTAGAWTSNKLLK  213 (401)
T ss_pred             HHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCCEEEEE-EECCEEECCEEEEECCCCHHHHHCC
T ss_conf             999999999874968734860366542676789548999-7277032135789538861234313