HHsearch alignment for GI: 254780808 and conserved domain: TIGR01377
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form; InterPro: IPR006281 This set of sequences describe the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) form that contain a covalent and noncovalent flavin, this entry represents the monomeric form.; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=98.33 E-value=5.1e-07 Score=69.40 Aligned_cols=146 Identities=21% Similarity=0.275 Sum_probs=91.2
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH---------------------HHC-CCCC--CC--------------
Q ss_conf 578898894268999999985899899998076---------------------260-1246--67--------------
Q gi|254780808|r 6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT---------------------STI-GSMS--CN-------------- 47 (626)
Q Consensus 6 ~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~---------------------~~~-ael~--Cn-------------- 47 (626)
T Consensus 1 fDvIVvGAG~~G~~aaY~LAK~~~~~LLleqFd~pH~rGSsHG~sRiIR~aY~Edr~Y~~m~~e~~~lWa~le~E~g~k~ 80 (401)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKRGKKTLLLEQFDLPHSRGSSHGQSRIIRKAYPEDRFYTSMVSECYQLWAQLEKEAGTKL 80 (401)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 95799817613568999987538617887515677678887877100010267863578899999999999862147264
Q ss_pred --CC---CCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-------------------CCCCCHHHHHHHHH
Q ss_conf --00---2211224-89999986303999999886314887307878-------------------55534678784999
Q gi|254780808|r 48 --PA---IGGLGKG-HLVREIDALDGLMGRVADAAGIQFRVLNVKKG-------------------PAVRGPRTQADREL 102 (626)
Q Consensus 48 --ps---~gg~akg-~L~~Ei~aLgg~m~~~aD~~~i~~r~ln~skG-------------------pAv~alraqvDR~~ 102 (626)
T Consensus 81 h~qT~~l~~G~k~~s~~l~~~-------~a~~~~~~l~H~~~~s~~l~~rf~G~i~~p~n~~g~~~~~gGvl~~----~k 149 (401)
T TIGR01377 81 HRQTGLLLLGPKENSQSLKTI-------VATLSRHGLEHELLSSKQLKQRFPGNIRVPRNEVGLLDELGGVLYA----EK 149 (401)
T ss_pred ECCCCEEEECCCCCCHHHHHH-------HHHHHHCCCCEEEECCHHHHHCCCCCEECCCCEEEEEECCCCEECH----HH
T ss_conf 313451563157786058999-------9988625523033164123200476234068607887468874622----78
Q ss_pred HHHHHHHHHHCCCCCEEEHHHHCCCCCC---CCCEEEEEECCCCCCCCCCCCCCCCCCCH-HHHH
Q ss_conf 9999999997089968980010112025---88113222035863344543334664310-1344
Q gi|254780808|r 103 YRLAMQREILSQENLDVIQGEVAGFNTE---KNIISSIVMQDNSMIRCSTVVLTTGTFLR-GVIH 163 (626)
Q Consensus 103 fs~~vt~~l~~~pni~i~~~eV~~l~~~---~~~~~~v~~~~g~~~~~~~viiatGtfl~-g~~~ 163 (626)
T Consensus 150 a~~a~q~l~~~~Ga~v~d~~kV~~i~~~GesGe~~vt~k-t~~~sy~a~~lvvtaGaW~s~kLl~ 213 (401)
T TIGR01377 150 ALRALQELAEAHGAIVRDGTKVVEIKPDGESGELLVTVK-TTKDSYQAKKLVVTAGAWTSNKLLK 213 (401)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCCEEEEE-EECCEEECCEEEEECCCCHHHHHCC
T ss_conf 999999999874968734860366542676789548999-7277032135789538861234313