HHsearch alignment for GI: 254780808 and conserved domain: TIGR01813
>TIGR01813 flavo_cyto_c flavocytochrome c; InterPro: IPR010960 This entry describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of Escherichia coli, mitochondria, and other well-characterised systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterised as a water-soluble periplasmic protein with four haem groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiration.; GO: 0000104 succinate dehydrogenase activity.
Probab=97.69 E-value=0.00016 Score=51.61 Aligned_cols=152 Identities=24% Similarity=0.365 Sum_probs=81.4
Q ss_pred CEEEECCCHHHHHHHHHHHHCC-CCEEEEECCHH-----HC--CCCCC--------------CCCC-------CCCC--H
Q ss_conf 7889889426899999998589-98999980762-----60--12466--------------7002-------2112--2
Q gi|254780808|r 7 DVIVIGGGHAGCEAAAVAAKLG-ASTALITHKTS-----TI--GSMSC--------------NPAI-------GGLG--K 55 (626)
Q Consensus 7 dViVIGaG~AG~EAA~~~Ar~G-~~v~L~~~~~~-----~~--ael~C--------------nps~-------gg~a--k 55 (626)
T Consensus 1 dvvvvGSG~AGlsAA~~A~~~G~~~vv~LEK~~~iGGNS~~~ag~mn~a~T~~Q~~~gi~DdS~el~~~DtlkgG~g~n~ 80 (487)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGLANVVVLEKMPVIGGNSAIAAGGMNAAGTDIQKKKGIEDDSPELFIKDTLKGGRGIND 80 (487)
T ss_pred CEEEEECCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 96898427688999999986468763787057523226899772102356848885488899677889988863278887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCC-C--------CCC-CCHHHHHHHHHHHHHHHHHHHCCC------CCE
Q ss_conf 489999986303999999886314887-30787-8--------555-346787849999999999997089------968
Q gi|254780808|r 56 GHLVREIDALDGLMGRVADAAGIQFRV-LNVKK-G--------PAV-RGPRTQADRELYRLAMQREILSQE------NLD 118 (626)
Q Consensus 56 g~L~~Ei~aLgg~m~~~aD~~~i~~r~-ln~sk-G--------pAv-~alraqvDR~~fs~~vt~~l~~~p------ni~ 118 (626)
T Consensus 81 ~~L~~~la~~s~~a~~wl~d~~~~~~l~~~~~~GGhs~~R~Hrp~gG~~~G~~iv~-----~L~~~a~~~gskDsnlv~~ 155 (487)
T TIGR01813 81 PELVRTLAEESADAVDWLQDCGVGFRLDDLIQLGGHSVKRAHRPTGGAASGAEIVQ-----KLSKKAKKEGSKDSNLVET 155 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEECCHHHHCCCCCCCCCCCCCCCCCCCCHHHH-----HHHHHHHHCCCCCCCHHHH
T ss_conf 89999999878899887764221000111443278764643034788767840117-----7788774337743211221
Q ss_pred EEHHHHCCCCCCCC-CEEEEEECC------------CCCCCCCCCCCCCCCCC-HHHHH
Q ss_conf 98001011202588-113222035------------86334454333466431-01344
Q gi|254780808|r 119 VIQGEVAGFNTEKN-IISSIVMQD------------NSMIRCSTVVLTTGTFL-RGVIH 163 (626)
Q Consensus 119 i~~~eV~~l~~~~~-~~~~v~~~~------------g~~~~~~~viiatGtfl-~g~~~ 163 (626)
T Consensus 156 ~~n~~v~~li~d~~G~v~Gv~V~~~Y~F~~~~~~~~~~~~a~k~Vv~AtGGFgy~N~~~ 214 (487)
T TIGR01813 156 RLNSKVEDLIQDDQGQVVGVVVKGDYDFKDEKKGKKIYIKAAKAVVLATGGFGYSNKEL 214 (487)
T ss_pred HCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCEEEEECCCCHHHHHH
T ss_conf 00672799998697118999962122588777787326755060689757613333899