HHsearch alignment for GI: 254780808 and conserved domain: TIGR03143

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.95  E-value=2.8e-09  Score=85.43  Aligned_cols=115  Identities=23%  Similarity=0.356  Sum_probs=76.4

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             87635788988942689999999858998999980762601246670022112248999998630399999988631488
Q gi|254780808|r    2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFR   81 (626)
Q Consensus         2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r   81 (626)
T Consensus         1 M~~~YDvIIIGgGPAGlsAAIYaaRaglktlvIEk~--~~GGqi~~t~~-------------------------------   47 (555)
T TIGR03143         1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD--DFGGQITITSE-------------------------------   47 (555)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC--CCCCCCEECCC-------------------------------
T ss_conf             984472999995688999999999789967999668--86865563685-------------------------------


Q ss_pred             HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCH
Q ss_conf             730787855534678784999999999999708996898001011202588113222035863344543334664310
Q gi|254780808|r   82 VLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR  159 (626)
Q Consensus        82 ~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~  159 (626)
T Consensus        48 VeNY---PG~~~----isG~eL~~~m~~qA~~~-Gve~~~~~V~~i~~~g~-~k~V~t~~g-~~~ak~VIIATGa~pr  115 (555)
T TIGR03143        48 VVNY---PGILN----TTGPELMQEMRQQAQDF-GVKFLQAEVLDVDFDGD-IKTIKTARG-DYKTLAVLIATGASPR  115 (555)
T ss_pred             EEEC---CCCCC----CCHHHHHHHHHHHHHHC-CCEEEEEEEEEEECCCC-CEEEEECCC-EEEECEEEECCCCCCC
T ss_conf             6878---88779----86899999999999977-96999656999973799-589998897-8996979999999714