HHsearch alignment for GI: 254780808 and conserved domain: TIGR03143
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.95 E-value=2.8e-09 Score=85.43 Aligned_cols=115 Identities=23% Similarity=0.356 Sum_probs=76.4
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87635788988942689999999858998999980762601246670022112248999998630399999988631488
Q gi|254780808|r 2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFR 81 (626)
Q Consensus 2 ~~~~~dViVIGaG~AG~EAA~~~Ar~G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r 81 (626)
T Consensus 1 M~~~YDvIIIGgGPAGlsAAIYaaRaglktlvIEk~--~~GGqi~~t~~------------------------------- 47 (555)
T TIGR03143 1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD--DFGGQITITSE------------------------------- 47 (555)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC--CCCCCCEECCC-------------------------------
T ss_conf 984472999995688999999999789967999668--86865563685-------------------------------
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCH
Q ss_conf 730787855534678784999999999999708996898001011202588113222035863344543334664310
Q gi|254780808|r 82 VLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLR 159 (626)
Q Consensus 82 ~ln~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl~ 159 (626)
T Consensus 48 VeNY---PG~~~----isG~eL~~~m~~qA~~~-Gve~~~~~V~~i~~~g~-~k~V~t~~g-~~~ak~VIIATGa~pr 115 (555)
T TIGR03143 48 VVNY---PGILN----TTGPELMQEMRQQAQDF-GVKFLQAEVLDVDFDGD-IKTIKTARG-DYKTLAVLIATGASPR 115 (555)
T ss_pred EEEC---CCCCC----CCHHHHHHHHHHHHHHC-CCEEEEEEEEEEECCCC-CEEEEECCC-EEEECEEEECCCCCCC
T ss_conf 6878---88779----86899999999999977-96999656999973799-589998897-8996979999999714