HHsearch alignment for GI: 254780808 and conserved domain: TIGR03169
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.28 E-value=4.8e-07 Score=69.56 Aligned_cols=104 Identities=18% Similarity=0.328 Sum_probs=69.1
Q ss_pred CEEEECCCHHHHHHHHHHHHC---CCCEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 788988942689999999858---99899998076260124667002211224899999863039999998863148873
Q gi|254780808|r 7 DVIVIGGGHAGCEAAAVAAKL---GASTALITHKTSTIGSMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFRVL 83 (626)
Q Consensus 7 dViVIGaG~AG~EAA~~~Ar~---G~~v~L~~~~~~~~ael~Cnps~gg~akg~L~~Ei~aLgg~m~~~aD~~~i~~r~l 83 (626)
T Consensus 1 hiVIvGgG~aG~~~a~~L~~~~~~~~~ItLId~~~~~~----y~~~lp~~~-----------~g~~-------------- 51 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTP----YSGMLPGMI-----------AGHY-------------- 51 (364)
T ss_pred CEEEECCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCE----ECCHHHHHH-----------HCCC--------------
T ss_conf 99999960999999999704178998399999988651----625169997-----------4047--------------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 078785553467878499999999999970899689800101120258811322203586334454333466431
Q gi|254780808|r 84 NVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVIQGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFL 158 (626)
Q Consensus 84 n~skGpAv~alraqvDR~~fs~~vt~~l~~~pni~i~~~eV~~l~~~~~~~~~v~~~~g~~~~~~~viiatGtfl 158 (626)
T Consensus 52 ---------------~~~~i~~~~~~~-~~~~gv~~i~~~V~~ID~~~k~---V~~~~g~~l~YD~LViAtGs~~ 107 (364)
T TIGR03169 52 ---------------SLDEIRIDLRRL-ARQAGARFVIAEATGIDPDRRK---VLLANRPPLSYDVLSLDVGSTT 107 (364)
T ss_pred ---------------CHHHEECCHHHH-HHHCCCEEEEEEEEEEECCCCE---EEECCCCEEECCEEEEECCCCC
T ss_conf ---------------799922168999-9777949996378999768898---9988998873688999436777