BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780808|ref|YP_003065221.1| tRNA uridine
5-carboxymethylaminomethyl modification enzyme GidA [Candidatus
Liberibacter asiaticus str. psy62]
(626 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780808|ref|YP_003065221.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
[Candidatus Liberibacter asiaticus str. psy62]
Length = 626
Score = 1286 bits (3328), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 626/626 (100%), Positives = 626/626 (100%)
Query: 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR
Sbjct: 1 MINRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVR 60
Query: 61 EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI
Sbjct: 61 EIDALDGLMGRVADAAGIQFRVLNVKKGPAVRGPRTQADRELYRLAMQREILSQENLDVI 120
Query: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN
Sbjct: 121 QGEVAGFNTEKNIISSIVMQDNSMIRCSTVVLTTGTFLRGVIHIGKLKIPAGRMGDSPSN 180
Query: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC
Sbjct: 181 SLFNSFMKFDFDTGRLKTGTPARLDGKTIIWDKTEKQFADERLIPFSFMTDKITNRQIEC 240
Query: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL
Sbjct: 241 GITRTNLETHRIIMENIKHSAIYSGDIKSYGPRYCPSIEDKIVRFGERNGHQIFLEPEGL 300
Query: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI
Sbjct: 301 NTDVVYPNGISTALPEEIQHQFIRTIPGLEKVNIIRPGYAIEYDYINPKELFPTLETKKI 360
Query: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV
Sbjct: 361 SGLFLAGQINGTTGYEEAAAQGLVAGINSARKSNKLDCICFSRTDSYIGVMIDDLTSKGV 420
Query: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS
Sbjct: 421 LEPYRMFTSRAEYRISLRPDNADNRLTPIGMKLGCIGERRQKRFAKYIQEYNFLRSLLKS 480
Query: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES
Sbjct: 481 LVLTSKNLSSTSISFKQDGKTRTAYEFLSYPDFSIQNLFSICPDARKFSSLVIERLQIES 540
Query: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG
Sbjct: 541 SYAAYTGRQMIEAKEIKFEEKRLIPKDFDYSSLPALSNELKEKLSILKPFNLLQASKIEG 600
Query: 601 MTPAALNLLLIYIKKNTVKLNEIVLV 626
MTPAALNLLLIYIKKNTVKLNEIVLV
Sbjct: 601 MTPAALNLLLIYIKKNTVKLNEIVLV 626
>gi|254780842|ref|YP_003065255.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 384
Score = 33.9 bits (76), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
+DVI+IG G AG AA AAK G TAL++ ++
Sbjct: 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS 36
>gi|254780675|ref|YP_003065088.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 481
Score = 33.5 bits (75), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 2 INRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCNPAIGGLGKGHLVRE 61
++R YD+I+IG G AG AA AA+LG A++ + + +G + N G + L+R
Sbjct: 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEY--AGLGGICLN--WGCIPTKSLLRS 56
Query: 62 IDALD 66
+ LD
Sbjct: 57 AEILD 61
>gi|254781055|ref|YP_003065468.1| glutathione reductase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 461
Score = 32.0 bits (71), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 6 YDVIVIGGGHAGCEAAAVAAKLGASTAL 33
YD++VIG G +G +A +AA+LG A+
Sbjct: 5 YDLVVIGAGSSGVRSARLAAQLGKKVAI 32
Score = 28.1 bits (61), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 9 IVIGGGHAGCEAAAVAAKLGASTALITHKTSTI 41
++IGGG+ E A + LG+ T L+T S +
Sbjct: 172 LIIGGGYIAVEFAGILNSLGSKTTLVTRGNSIL 204
>gi|254781053|ref|YP_003065466.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 466
Score = 28.5 bits (62), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47
YDV V+GGG AG A AA+L A+I K T G N
Sbjct: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAII-EKEKTYGGTCLN 43
Score = 25.8 bits (55), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 7 DVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
+++VIG G G E +V +LG+ +I H + + M
Sbjct: 176 NLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGM 213
>gi|254780283|ref|YP_003064696.1| thioredoxin reductase (NADPH) protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 321
Score = 28.1 bits (61), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS 43
++ DVIV+GGG+ E A AK+ A I H+ S++ S
Sbjct: 145 KNKDVIVVGGGNTAAEEALHLAKI-ARRVTIVHRRSSLRS 183
>gi|254780177|ref|YP_003064590.1| lipoyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Length = 257
Score = 26.6 bits (57), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 15/80 (18%)
Query: 453 LGCIGERRQKRFAKYIQEYNFLRSLLKSLVLTSKNLSSTSISFKQDGKTRTAYEFLSYPD 512
LG +GERR+ R ++ N R L+L + +++ I ++ ++S+
Sbjct: 134 LGIVGERREDRVGIWVVRLNKTRD--NQLLLIEEKIAAIGIRIRK---------WISFHG 182
Query: 513 FSIQNLFSICPDARKFSSLV 532
S+ +I PD ++ +V
Sbjct: 183 LSL----NISPDLSYYTGIV 198
>gi|254780941|ref|YP_003065354.1| GTP-binding protein Era [Candidatus Liberibacter asiaticus str.
psy62]
Length = 311
Score = 25.4 bits (54), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 3 NRSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSM 44
+RS V ++G +AG ++ V +GA +++THK T S+
Sbjct: 20 SRSGCVALVGATNAG-KSTLVNRFVGAKVSIVTHKVQTTRSI 60
>gi|254780266|ref|YP_003064679.1| 30S ribosomal protein S12 [Candidatus Liberibacter asiaticus str.
psy62]
Length = 124
Score = 25.0 bits (53), Expect = 4.1, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 54 GKGHLVREIDALDGLMGRVADAAGIQFRVL 83
G+GH ++E + GRV D G+++RV+
Sbjct: 70 GEGHNLQEHSVVMLCGGRVKDLPGVKYRVI 99
>gi|254780847|ref|YP_003065260.1| hypothetical protein CLIBASIA_03710 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 282
Score = 24.3 bits (51), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 142 NSMIRCSTVVLTTGTFLRGVIH-IGKLKIPAGRMGDSPSNSLFNSFMK 188
N +I C+ + L G++ IGK +P M +SL NSF K
Sbjct: 169 NKIIPCAGALALIYQQLNGIVKMIGKPHLPIYEMAFKKISSLCNSFNK 216
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.319 0.137 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 381,433
Number of Sequences: 1233
Number of extensions: 15913
Number of successful extensions: 59
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 47
Number of HSP's gapped (non-prelim): 16
length of query: 626
length of database: 328,796
effective HSP length: 79
effective length of query: 547
effective length of database: 231,389
effective search space: 126569783
effective search space used: 126569783
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 41 (20.4 bits)