HHsearch alignment for GI: 254780809 and conserved domain: CHL00189
>CHL00189 infB translation initiation factor 2; Provisional.
Probab=99.19 E-value=7.9e-11 Score=94.93 Aligned_cols=138 Identities=22% Similarity=0.322 Sum_probs=93.3
Q ss_pred HHHHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCC-CCEEECCCCCCC----CCEEEEEEECCHHCCCCHHHHHH
Q ss_conf 5543202302431146631888999985520002345468-721100012456----83589995081000241035666
Q gi|254780809|r 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG-TTRDVLTIDLDL----EGYLVKISDTAGIRETDDIVEKE 287 (440)
Q Consensus 213 ~~~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~G-TTRD~i~~~~~i----~g~~~~l~DTaGir~t~d~IE~~ 287 (440)
T Consensus 266 ~~l~~RpPVVTIMGHVDHGKTsLLD~iR~t~V--a~~EaGGITQhIGAy~V~~~~~~~~~~ITFlDTPGH-------eAF 336 (770)
T CHL00189 266 IHLIRRPPIVTILGHVDHGKTTLLDAIRKTNI--AQKEAGGITQKIGAYEVEVPYKDQNQKIVFLDTPGH-------EAF 336 (770)
T ss_pred HCCCCCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCCCCEECEEEEEECCCCCCCEEEEECCCCH-------HHH
T ss_conf 10677899899857725772037888852885--134567655503529997515788975899559946-------889
Q ss_pred HHHHHHHHHHHHCCEEECCCCCC---HHHHH-----HHCCCCCCCCCCCCCCCCCCCHH-------------------HH
Q ss_conf 67888998503011020135898---56634-----31289853222233344654200-------------------00
Q gi|254780809|r 288 GIKRTFLEVENADLILLLKEINS---KKEIS-----FPKNIDFIFIGTKSDLYSTYTEE-------------------YD 340 (440)
Q Consensus 288 GI~ra~~~i~~aDlil~v~D~~~---~~~~~-----~~~~~~~i~V~NK~Dl~~~~~~~-------------------~~ 340 (440)
T Consensus 337 t~MRa-RGA~vTDIvILVVAADDGVmPQTiEAI~hakaA~VPiIVAINKiDkp~an~~rVk~eL~e~gli~EewGGd~~~ 415 (770)
T CHL00189 337 SSMRS-RGANVTDIAILIVAADDGVKPQTIEAINHIQAANVPIIVAINKIDKENANIDRVKQELSKYNLISEKWGGQTPM 415 (770)
T ss_pred HHHHH-CCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHCCCCEEE
T ss_conf 99986-27866667999996578856727999999987699889998774589988578999999869552223795599
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 01333323235899999999
Q gi|254780809|r 341 HLISSFTGEGLEELINKIKS 360 (440)
Q Consensus 341 ~~ISaktg~Gi~~L~~~I~~ 360 (440)
T Consensus 416 V~ISAktg~gId~LLE~IlL 435 (770)
T CHL00189 416 IPISALQGTNIDKLLEMILL 435 (770)
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99661679887999999999