HHsearch alignment for GI: 254780809 and conserved domain: COG0378
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription].
Probab=97.85 E-value=2.4e-05 Score=56.86 Aligned_cols=139 Identities=22% Similarity=0.259 Sum_probs=79.4
Q ss_pred CCEEEECCCCCCHHHHHHHHHCC-----HHCCCCCCCCCCEEECCCCCCCCCEEEEEEECC-HHCCCCHHHHHHHHHHHH
Q ss_conf 30243114663188899998552-----000234546872110001245683589995081-000241035666678889
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKK-----DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA-GIRETDDIVEKEGIKRTF 293 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~-----~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTa-Gir~t~d~IE~~GI~ra~ 293 (440)
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~-~g~~i~~v~TG~~CH~-da~m~~~ai~~l~ 91 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKL-PGEPIIGVETGKGCHL-DASMNLEAIEELV 91 (202)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEECEEECHHHHHHHHHC-CCCEEEEECCCCCCCC-CHHHHHHHHHHHH
T ss_conf 8999617998678999999999997527768996404006559999737-7980687403876588-6788999999986
Q ss_pred HHHHHHCCEE---------------------ECCCCCCHHHHHHHCCC-----CCCCCCCCCCCCCCCCH----------
Q ss_conf 9850301102---------------------01358985663431289-----85322223334465420----------
Q gi|254780809|r 294 LEVENADLIL---------------------LLKEINSKKEISFPKNI-----DFIFIGTKSDLYSTYTE---------- 337 (440)
Q Consensus 294 ~~i~~aDlil---------------------~v~D~~~~~~~~~~~~~-----~~i~V~NK~Dl~~~~~~---------- 337 (440)
T Consensus 92 ~~~~~~Dll~iEs~GNL~~~~sp~L~d~~~v~VidvteGe~~P~-K~gP~i~~aDllVInK~DLa~~v~~dlevm~~da~ 170 (202)
T COG0378 92 LDFPDLDLLFIESVGNLVCPFSPDLGDHLRVVVIDVTEGEDIPR-KGGPGIFKADLLVINKTDLAPYVGADLEVMARDAK 170 (202)
T ss_pred HCCCCCCEEEEECCCCEECCCCCCHHHCEEEEEEECCCCCCCCC-CCCCCEEEEEEEEEEHHHHHHHHCCCHHHHHHHHH
T ss_conf 31776778999237643244680413046999998788888765-57996467418998567738772866999999999
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -----000013333232358999999999
Q gi|254780809|r 338 -----EYDHLISSFTGEGLEELINKIKSI 361 (440)
Q Consensus 338 -----~~~~~ISaktg~Gi~~L~~~I~~~ 361 (440)
T Consensus 171 ~~np~~~ii~~n~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 171 EVNPEAPIIFTNLKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 84999988998478786899999998764