HHsearch alignment for GI: 254780809 and conserved domain: COG1084

>COG1084 Predicted GTPase [General function prediction only].
Probab=99.85  E-value=1.6e-20  Score=162.25  Aligned_cols=201  Identities=22%  Similarity=0.256  Sum_probs=134.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf             67777778898850036889998875314310245665677699888654443113544311233258888640100011
Q gi|254780809|r  123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKND  202 (440)
Q Consensus       123 idL~qaEai~~LI~A~t~~~~~~a~~~l~G~ls~~i~~lr~~L~~~~a~iEa~IDF~dEedi~~~~~~~~~~~i~~i~~~  202 (440)
T Consensus       106 i~~l~~eYi~~lk~a~~~~~~~~lrR~a~GR~aSiik~i~~~L~fL~~~r------------------~~l~~LP~Id--  165 (346)
T COG1084         106 IEKLAREYIRLLKAAKDPKEANQLRRQAFGRVASIIKKIDDDLEFLRKAR------------------DHLKKLPAID--  165 (346)
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHCCCCCC--
T ss_conf             99999999998742798668999999998789999998627899999999------------------9985088779--


Q ss_pred             HHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCC---
Q ss_conf             21233322345543202302431146631888999985520002345468721100012456835899950810002---
Q gi|254780809|r  203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE---  279 (440)
Q Consensus       203 l~~ll~~~~~~~~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~---  279 (440)
T Consensus       166 --------------p~~pTivVaG~PNVGKSSlv~~lT~AkpE-vA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl  230 (346)
T COG1084         166 --------------PDLPTIVVAGYPNVGKSSLVRKLTTAKPE-VAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPL  230 (346)
T ss_pred             --------------CCCCEEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCH
T ss_conf             --------------99973898569987589999887548976-678885336546765504870589842886457885


Q ss_pred             -CCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHH------HHH------HHCCCCCCCCCCCCCCCCCCCHHH-------
Q ss_conf             -410356666788899850301102013589856------634------312898532222333446542000-------
Q gi|254780809|r  280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSKK------EIS------FPKNIDFIFIGTKSDLYSTYTEEY-------  339 (440)
Q Consensus       280 -t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~------~~~------~~~~~~~i~V~NK~Dl~~~~~~~~-------  339 (440)
T Consensus       231 ~ErN~IE~qAi~-AL~hl--~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~~~~~~~~~~~  307 (346)
T COG1084         231 EERNEIERQAIL-ALRHL--AGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEKLEEIEASVLE  307 (346)
T ss_pred             HHHCHHHHHHHH-HHHHH--CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             773689999999-99974--285899976850028999999999999998538876999741012466678999999876


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             -----0013333232358999999999
Q gi|254780809|r  340 -----DHLISSFTGEGLEELINKIKSI  361 (440)
Q Consensus       340 -----~~~ISaktg~Gi~~L~~~I~~~  361 (440)
T Consensus       308 ~~~~~~~~~~~~~~~~~d~~~~~v~~~  334 (346)
T COG1084         308 EGGEEPLKISATKGCGLDKLREEVRKT  334 (346)
T ss_pred             HCCCCCCCEEEEEHHHHHHHHHHHHHH
T ss_conf             326554313543000178899999887