HHsearch alignment for GI: 254780809 and conserved domain: COG1084
>COG1084 Predicted GTPase [General function prediction only].
Probab=99.85 E-value=1.6e-20 Score=162.25 Aligned_cols=201 Identities=22% Similarity=0.256 Sum_probs=134.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 67777778898850036889998875314310245665677699888654443113544311233258888640100011
Q gi|254780809|r 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKND 202 (440)
Q Consensus 123 idL~qaEai~~LI~A~t~~~~~~a~~~l~G~ls~~i~~lr~~L~~~~a~iEa~IDF~dEedi~~~~~~~~~~~i~~i~~~ 202 (440)
T Consensus 106 i~~l~~eYi~~lk~a~~~~~~~~lrR~a~GR~aSiik~i~~~L~fL~~~r------------------~~l~~LP~Id-- 165 (346)
T COG1084 106 IEKLAREYIRLLKAAKDPKEANQLRRQAFGRVASIIKKIDDDLEFLRKAR------------------DHLKKLPAID-- 165 (346)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHCCCCCC--
T ss_conf 99999999998742798668999999998789999998627899999999------------------9985088779--
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCC---
Q ss_conf 21233322345543202302431146631888999985520002345468721100012456835899950810002---
Q gi|254780809|r 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE--- 279 (440)
Q Consensus 203 l~~ll~~~~~~~~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~--- 279 (440)
T Consensus 166 --------------p~~pTivVaG~PNVGKSSlv~~lT~AkpE-vA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl 230 (346)
T COG1084 166 --------------PDLPTIVVAGYPNVGKSSLVRKLTTAKPE-VAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPL 230 (346)
T ss_pred --------------CCCCEEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCH
T ss_conf --------------99973898569987589999887548976-678885336546765504870589842886457885
Q ss_pred -CCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHH------HHH------HHCCCCCCCCCCCCCCCCCCCHHH-------
Q ss_conf -410356666788899850301102013589856------634------312898532222333446542000-------
Q gi|254780809|r 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSKK------EIS------FPKNIDFIFIGTKSDLYSTYTEEY------- 339 (440)
Q Consensus 280 -t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~------~~~------~~~~~~~i~V~NK~Dl~~~~~~~~------- 339 (440)
T Consensus 231 ~ErN~IE~qAi~-AL~hl--~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~~~~~~~~~~~ 307 (346)
T COG1084 231 EERNEIERQAIL-ALRHL--AGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEKLEEIEASVLE 307 (346)
T ss_pred HHHCHHHHHHHH-HHHHH--CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 773689999999-99974--285899976850028999999999999998538876999741012466678999999876
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -----0013333232358999999999
Q gi|254780809|r 340 -----DHLISSFTGEGLEELINKIKSI 361 (440)
Q Consensus 340 -----~~~ISaktg~Gi~~L~~~I~~~ 361 (440)
T Consensus 308 ~~~~~~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 308 EGGEEPLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred HCCCCCCCEEEEEHHHHHHHHHHHHHH
T ss_conf 326554313543000178899999887